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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLI292
Library SL
(Link to library)
Clone ID SLI292
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLI292Z
(Link to Original site)
Representative DNA sequence 
>SLI292 (SLI292Q) /CSM/SL/SLI2-D/SLI292Q.Seq.d/
XXXXXXXXXXCACGTAATTATGCTAATGAAGGTTACAATTCCGTGAGAGATGGTGCACAA
AGAGCTGGCAACGGCGCACGTAATTATGCTCAACAAGGTTATCAAGCATGGAGAGAAGGT
GTCAATGAGATTGGTGATGATATCGCCAATACTGCACATGATGTAGGTGATGGTTTCGCC
AATACTGCACGTGAAGTAGGTGATGGAATTAGAATCACTGCAGAGGAGGGATATGAACTC
ATTAAAGATGGAGCTGAAGAAACTTGGGTGAAGAAATATTAAAGGTTATCCTTAATTAAA
ATTAAAAAAGCACAACAAAGAATGGCTGAACAAGAAGAAAGAAGAAGGTTGATGCAAGAA
GAAAGTGAAAGAAGACGATTGCAAAGAAACAGAGAAAGACAAGAGCCAATTAGAACTTAT
ACAACTGCACAAGAAGCTCAACGATATATACCCAAACCTGGTAACTTTGCACGTAAAAGA
GGTGCAAGAAATT
sequence update 1998. 8.22
Translated Amino Acid sequence 
---RNYANEGYNSVRDGAQRAGNGARNYAQQGYQAWREGVNEIGDDIANTAHDVGDGFAN
TAREVGDGIRITAEEGYELIKDGAEETWVKKY*rlslikikkaqqrmaeqeerrrlmqee
serrrlqrnrerqepirtyttaqeaqryipkpgnfarkrgarn
Translated Amino Acid sequence (All Frames) 
Frame A:
---t*lc**rlqfrerwctkswqrrt*lcstrlssmerrcq*dw**yrqyct*cr*wfrq
yct*sr*wn*nhcrggi*th*rws*rnlgeeilkviln*n*ksttkng*trrkkkvdarr
k*kktiakkqrktran*nlynctrsstiytqtw*lct*krckk


Frame B:
---RNYANEGYNSVRDGAQRAGNGARNYAQQGYQAWREGVNEIGDDIANTAHDVGDGFAN
TAREVGDGIRITAEEGYELIKDGAEETWVKKY*rlslikikkaqqrmaeqeerrrlmqee
serrrlqrnrerqepirtyttaqeaqryipkpgnfarkrgarn


Frame C:
---vimlmkvtip*emvhkelatahvimlnkvikhgekvsmrlvmispilhmm*vmvspi
lhvk*vmeleslqrrdmnslkmelkklg*rnikgyp*lklkkhnkewlnkkkeeg*ckkk
vkeddcketekdksqleliqlhkklndiypnlvtlhvkevqei
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF267 (SSF267Q) /CSM/SS/SSF2-C/SSF267Q.Seq.d/                        626   e-179
SLI292 (SLI292Q) /CSM/SL/SLI2-D/SLI292Q.Seq.d/                        626   e-179
SLI156 (SLI156Q) /CSM/SL/SLI1-C/SLI156Q.Seq.d/                        626   e-179
SLH373 (SLH373Q) /CSM/SL/SLH3-D/SLH373Q.Seq.d/                        626   e-179
SLE562 (SLE562Q) /CSM/SL/SLE5-C/SLE562Q.Seq.d/                        626   e-179
SLE376 (SLE376Q) /CSM/SL/SLE3-D/SLE376Q.Seq.d/                        626   e-179
SLD404 (SLD404Q) /CSM/SL/SLD4-A/SLD404Q.Seq.d/                        626   e-179
SLD327 (SLD327Q) /CSM/SL/SLD3-B/SLD327Q.Seq.d/                        626   e-179
SLD271 (SLD271Q) /CSM/SL/SLD2-C/SLD271Q.Seq.d/                        626   e-179
SLD176 (SLD176Q) /CSM/SL/SLD1-D/SLD176Q.Seq.d/                        626   e-179
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU053271) Dictyostelium discoideum slug cDNA, clone SLI292.      581   0.0    2
(AU052444) Dictyostelium discoideum slug cDNA, clone SLD327.      581   0.0    2
(AU052409) Dictyostelium discoideum slug cDNA, clone SLD271.      581   0.0    2
(AU053213) Dictyostelium discoideum slug cDNA, clone SLI156.      581   0.0    2
(AU052348) Dictyostelium discoideum slug cDNA, clone SLD176.      581   0.0    2
(BJ377545) Dictyostelium discoideum cDNA clone:ddc24b03, 3' ...   581   0.0    2
(BJ342265) Dictyostelium discoideum cDNA clone:dda13n06, 3' ...   581   0.0    2
(AU052481) Dictyostelium discoideum slug cDNA, clone SLD404.      581   0.0    2
(AU033991) Dictyostelium discoideum slug cDNA, clone SLB705.      581   0.0    2
(BJ342984) Dictyostelium discoideum cDNA clone:dda15o13, 3' ...   581   0.0    2
dna update 2009. 6.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116551_24(AC116551|pid:none) Dictyostelium discoideum chromoso...    61   2e-08
AJ628940_1(AJ628940|pid:none) Pisum sativum mRNA for late embryo...    44   0.002
AC146855_28(AC146855|pid:none) Medicago truncatula clone mth2-16...    44   0.002
AM421808_498(AM421808|pid:none) Neisseria meningitidis serogroup...    42   0.008
AE017180_1660(AE017180|pid:none) Geobacter sulfurreducens PCA, c...    41   0.013
Z69360_4(Z69360|pid:none) Caenorhabditis elegans Cosmid F25H8, c...    41   0.017
T21369(T21369)hypothetical protein F25H8.5a - Caenorhabditis ele...    41   0.017
Z69360_3(Z69360|pid:none) Caenorhabditis elegans Cosmid F25H8, c...    41   0.017
EU780020_1(EU780020|pid:none) Fucus serratus isolate Fse_00017 h...    38   0.15
Z69360_5(Z69360|pid:none) Caenorhabditis elegans Cosmid F25H8, c...    36   0.55
protein update 2009. 6. 5
PSORT 

 psg: 0.53  gvh: 0.30  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 28.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SLI292 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLI292Z
3' end seq. 
>SLI292Z.Seq
----------CACGTAATTATGCTAATGAAGGTTACAATTCCGTGAGAGATGGTGCACAA
AGAGCTGGCAACGGCGCACGTAATTATGCTCAACAAGGTTATCAAGCATGGAGAGAAGGT
GTCAATGAGATTGGTGATGATATCGCCAATACTGCACATGATGTAGGTGATGGTTTCGCC
AATACTGCACGTGAAGTAGGTGATGGAATTAGAATCACTGCAGAGGAGGGATATGAACTC
ATTAAAGATGGAGCTGAAGAAACTTGGGTGAAGAAATATTAAAGGTTATCCTTAATTAAA
ATTAAAAAAGCACAACAAAGAATGGCTGAACAAGAAGAAAGAAGAAGGTTGATGCAAGAA
GAAAGTGAAAGAAGACGATTGCAAAGAAACAGAGAAAGACAAGAGCCAATTAGAACTTAT
ACAACTGCACAAGAAGCTCAACGATATATACCCAAACCTGGTAACTTTGCACGTAAAAGA
GGTGCAAGAAATT
Length of 3' end seq. 483
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -