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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLI272
Library SL
(Link to library)
Clone ID SLI272
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16527-1
Original site URL
Representative seq. ID SLI272E
(Link to Original site)
Representative DNA sequence 
>SLI272 (SLI272Q) /CSM/SL/SLI2-C/SLI272Q.Seq.d/
GAATAATATTGCAGATCGAGGATTTATCTTCGACAAGTCTACTGTGTCACTGCCCTATCA
ACTTTCGATGGTACGGTATTGGCCTACCATGGTTGTAACGGGTAACGGGGAATTAGGGTT
CGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACTTCTACGGAAGGCAGCAGGCGCGC
AAATTACTCAATCCCAATACGGGGAAGTAGTGACAATAAATATCAATACCTATCCTTTTT
GGAGGGCAATTGAAATGAACACAAATTAAAACTCTTAATTAACACAATTGGAGGGCAAGT
CTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCATATACTAAAGTTGTTGCAGTT
AAAAAGCTCGTAGTTGAAGTTTAAGGTTTACCGGGTTTATGTCATTTACCACTTCGTGGT
TAAATCGACACCGGTATCTCTTTCTTAATAGTTCAGCTTGTATTATCTTTGATAGTGCTT
GTTTGGACATTTCACTGTGAGAAAATTGTGGTGTTTAAAGCAGGCGTCTCGCCTGATCTT
TTGCAGCATGGTATGATGAAACATGACATTTTACGCTATTGAAAAAAAAAAAA
sequence update 1999. 7.23
Translated Amino Acid sequence 
e*ycrsriylrqvycvtalstfdgtvlayhgcng*rgirvrfrrgslrngyhfygrqqar
kllnpntgk**q*isipilfggqlk*tqiktln*hnwraslvpaaavipapiaytkvvav
kklvvev*glpglchlplrg*IDTGISFLIVQLVLSLIVLVWTFHCEKIVVFKAGVSPDL
LQHGMMKHDILRY*kkk
Translated Amino Acid sequence (All Frames) 
Frame A:
e*ycrsriylrqvycvtalstfdgtvlayhgcng*rgirvrfrrgslrngyhfygrqqar
kllnpntgk**q*isipilfggqlk*tqiktln*hnwraslvpaaavipapiaytkvvav
kklvvev*glpglchlplrg*IDTGISFLIVQLVLSLIVLVWTFHCEKIVVFKAGVSPDL
LQHGMMKHDILRY*kkk


Frame B:
nniadrgfifdkstvslpyqlsmvrywptmvvtgngelgfdsgega*emattstegsrra
nysipirgssdnkyqylsflegn*nehklkllintiggqvwcqqpr*fqlq*hilkllql
kss*lkfkvyrvyviyhfvvkstpvsls**fslyyl**clfghftvrklwclkqasrlif
csmv**nmtfyaiekkk


Frame C:
iilqiedlsstsllchcpinfrwygiglpwl*rvtgn*gsiperepekwlpllrkaagaq
itqsqygevvtinintypfwraiemntn*ns*ltqlegksgassrgnsssnsiy*sccs*
kars*slrftgfmsfttswlnrhrylflnssaciifdsacldisl*encgv*srrla*sf
aawydet*hftllkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLI272 (SLI272Q) /CSM/SL/SLI2-C/SLI272Q.Seq.d/                       1152   0.0
AHD181 (AHD181Q) /CSM/AH/AHD1-D/AHD181Q.Seq.d/                       1140   0.0
VHC181 (VHC181Q) /CSM/VH/VHC1-D/VHC181Q.Seq.d/                       1057   0.0
AHG763 (AHG763Q) /CSM/AH/AHG7-C/AHG763Q.Seq.d/                        938   0.0
VFG146 (VFG146Q) /CSM/VF/VFG1-B/VFG146Q.Seq.d/                        892   0.0
VHM640 (VHM640Q) /CSM/VH/VHM6-B/VHM640Q.Seq.d/                        890   0.0
VHH888 (VHH888Q) /CSM/VH/VHH8-D/VHH888Q.Seq.d/                        864   0.0
VHE675 (VHE675Q) /CSM/VH/VHE6-D/VHE675Q.Seq.d/                        852   0.0
VFD795 (VFD795Q) /CSM/VF/VFD7-D/VFD795Q.Seq.d/                        819   0.0
VHI874 (VHI874Q) /CSM/VH/VHI8-D/VHI874Q.Seq.d/                        811   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

K02641|K02641.1 Slime mold (D.discoideum) 17S small subunit ribosomal RNA gene, complete coding sequence.  1144  0.0  1
X00134|X00134.1 Dictyostelium discoideum 17S rRNA sequence.     1140  0.0  1
AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment.  1055  0.0  2
X00601|X00601.1 Dictyostelium discoideum ribosomal RNA gene.     615  0.0  4
Y17634|Y17634.2 Acaulospora trappei 18S rRNA gene, partial, clone pWD103-3-8.   270  e-114  3
AJ006800|AJ006800.1 Acaulospora trappei 18S rRNA gene, isolate NB112.   270  e-113  3
AF285277|AF285277.1 Acanthamoeba sp. KO99 18S small subunit ribosomal RNA gene, partial sequence.   270  e-111  2
AJ506028|AJ506028.1 Uncultured rhizosphere zygomycete partial 18S rRNA gene, clone RSC-CHU-57.   254  e-110  3
AY129549|AY129549.1 Mortierella parvispora 18S ribosomal RNA gene, partial sequence.   254  e-110  3
AY163443|AY163443.1 Uncultured soil fungus clone Pent 5.3ex 18S ribosomal RNA gene, partial sequence.   254  e-109  2
dna update 2003. 8.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU979522_1(EU979522|pid:none) Ornithoctonus huwena clone HWEco7 ...    59   1e-07
FN358262_1(FN358262|pid:none) Schistosoma mansoni genome sequenc...    49   8e-05
FN364425_1(FN364425|pid:none) Schistosoma mansoni genome sequenc...    48   2e-04
FN365438_1(FN365438|pid:none) Schistosoma mansoni genome sequenc...    47   5e-04
FN364608_1(FN364608|pid:none) Schistosoma mansoni genome sequenc...    47   5e-04
FN366187_1(FN366187|pid:none) Schistosoma mansoni genome sequenc...    47   5e-04
FN364380_1(FN364380|pid:none) Schistosoma mansoni genome sequenc...    47   5e-04
FN361659_1(FN361659|pid:none) Schistosoma mansoni genome sequenc...    47   5e-04
FN362765_1(FN362765|pid:none) Schistosoma mansoni genome sequenc...    47   5e-04
FN363218_1(FN363218|pid:none) Schistosoma mansoni genome sequenc...    47   5e-04
protein update 2009. 7. 5
PSORT 

 psg: 0.75  gvh: 0.61  alm: 0.17  top: 0.57  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.10  leu: 0.10  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SLI272 is nuc
5' end seq. ID SLI272F
5' end seq. 
>SLI272F.Seq
GAATAATATTGCAGATCGAGGATTTATCTTCGACAAGTCTACTGTGTCACTGCCCTATCA
ACTTTCGATGGTACGGTATTGGCCTACCATGGTTGTAACGGGTAACGGGGAATTAGGGTT
CGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACTTCTACGGAAGGCAGCAGGCGCGC
AAATTACTCAATCCCAATACGGGGAAGTAGTGACAATAAATATCAATACCTATCCTTTTT
GGA----------
Length of 5' end seq. 243
3' end seq. ID SLI272Z
3' end seq. 
>SLI272Z.Seq
----------ATGGTACGGTATTGGCCTACCATGGTTGTAACGGGTAACGGGGAATTAGG
GTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACTTCTACGGAAGGCAGCAGGCG
CGCAAATTACTCAATCCCAATACGGGGAAGTAGTGACAATAAATATCAATACCTATCCTT
TTTGGAGGGCAATTGAAATGAACACAAATTAAAACTCTTAATTAACACAATTGGAGGGCA
AGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCATATACTAAAGTTGTTGCA
GTTAAAAAGCTCGTAGTTGAAGTTTAAGGTTTACCGGGTTTATGTCATTTACCACTTCGT
GGTTAAATCGACACCGGTATCTCTTTCTTAATAGTTCAGCTTGTATTATCTTTGATAGTG
CTTGTTTGGACATTTCACTGTGAGAAAATTGTGGTGTTTAAAGCAGGCGTCTCGCCTGAT
CTTTTGCAGCATGGTATGATGAAACATGACATTTTACGCTATTGAAAAAAAAAAAA
Length of 3' end seq. 526
Connected seq. ID SLI272P
Connected seq. 
>SLI272P.Seq
GAATAATATTGCAGATCGAGGATTTATCTTCGACAAGTCTACTGTGTCACTGCCCTATCA
ACTTTCGATGGTACGGTATTGGCCTACCATGGTTGTAACGGGTAACGGGGAATTAGGGTT
CGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACTTCTACGGAAGGCAGCAGGCGCGC
AAATTACTCAATCCCAATACGGGGAAGTAGTGACAATAAATATCAATACCTATCCTTTTT
GGA----------ATGGTACGGTATTGGCCTACCATGGTTGTAACGGGTAACGGGGAATT
AGGGTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACTTCTACGGAAGGCAGCAG
GCGCGCAAATTACTCAATCCCAATACGGGGAAGTAGTGACAATAAATATCAATACCTATC
CTTTTTGGAGGGCAATTGAAATGAACACAAATTAAAACTCTTAATTAACACAATTGGAGG
GCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCATATACTAAAGTTGTT
GCAGTTAAAAAGCTCGTAGTTGAAGTTTAAGGTTTACCGGGTTTATGTCATTTACCACTT
CGTGGTTAAATCGACACCGGTATCTCTTTCTTAATAGTTCAGCTTGTATTATCTTTGATA
GTGCTTGTTTGGACATTTCACTGTGAGAAAATTGTGGTGTTTAAAGCAGGCGTCTCGCCT
GATCTTTTGCAGCATGGTATGATGAAACATGACATTTTACGCTATTGAAAAAAAAAAAA
Length of connected seq. 769
Full length Seq ID SLI272E
Full length Seq. 
>SLI272E.Seq
GAATAATATTGCAGATCGAGGATTTATCTTCGACAAGTCTACTGTGTCACTGCCCTATCA
ACTTTCGATGGTACGGTATTGGCCTACCATGGTTGTAACGGGTAACGGGGAATTAGGGTT
CGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACTTCTACGGAAGGCAGCAGGCGCGC
AAATTACTCAATCCCAATACGGGGAAGTAGTGACAATAAATATCAATACCTATCCTTTTT
GGAGGGCAATTGAAATGAACACAAATTAAAACTCTTAATTAACACAATTGGAGGGCAAGT
CTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCATATACTAAAGTTGTTGCAGTT
AAAAAGCTCGTAGTTGAAGTTTAAGGTTTACCGGGTTTATGTCATTTACCACTTCGTGGT
TAAATCGACACCGGTATCTCTTTCTTAATAGTTCAGCTTGTATTATCTTTGATAGTGCTT
GTTTGGACATTTCACTGTGAGAAAATTGTGGTGTTTAAAGCAGGCGTCTCGCCTGATCTT
TTGCAGCATGGTATGATGAAACATGACATTTTACGCTATTGAAAAAAAAAAAA
Length of full length seq. 593