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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLI271
Library SL
(Link to library)
Clone ID SLI271
Atlas ID
NBRP ID
dictyBase ID
Link to Contig Contig-U01385-1
Original site URL
Representative seq. ID SLI271P
(Link to Original site)
Representative DNA sequence 
>SLI271 (SLI271Q) /CSM/SL/SLI2-C/SLI271Q.Seq.d/
GTTTAGATCAATCATCAACATTTTGGGAATGTATTGCATGTCAAAATAAGAGATTAGTTG
ATTCAGTATTTTTAGATGAAAATATTAGTGAAAAGGTTGTCAATGATTTGACTAATTTCA
TACATGGAAAGAAATGGTATACCGATACTGGTGTACCTTATAGACGTGGTTATTTATTGT
ATGGTCCACCGGGATCGGGCAAAACTTCATTTAXXXXXXXXXXCAATCAATTCAAAATTG
GAAAATCCTCAAATTAGTACCGCTCAATTACAAGGTTGGTCATTATTCATCGTAATTCAC
CTTTAAATCTTTTACCAACTTGTGATGATTTCATTACTCAATGTACATCTGAAACTACTT
CAAATGATAAAATTACAAAAGAAATGTTAGATGATGAAATTAAATCTTATGATGATGATG
ATGAAGAAGAATCAATTAATAATAATATTAAATTAAATAAAAAATATAATAGTAATGGTA
ATAATAATTATCAAAAAGATGATAAAAAACCAAGTGTTTTATCACCTTCCAATTCAGAAT
CTTTAGATAATAGAAATGATGATAATGAAGAAATTTATGAAGACAATAATAATAATGAAC
TTTTTGATGGTAAGTATACTGGTAACTCAACAACTAGAAAAAGAAAAGTTTAAAAAGGAA
AAAAAAAATAGATTGAAAAAAAAAGAATATCTTTTAGAATATCTTTTTGTAAAATAAATA
AATAAATAAATAATAACTATAATAAAAAATAAAATAAAAATCTAATTTATTAATAATATA
AAAAAAAA
sequence update 1999. 2.23
Translated Amino Acid sequence 
LDQSSTFWECIACQNKRLVDSVFLDENISEKVVNDLTNFIHGKKWYTDTGVPYRRGYLLY
GPPGSGKTSF---

---INSKLENPQISTAQLQGWSLFIVIHL*ifyqlvmisllnvhlkllqmiklqkkc*mm
klnlmmmmmkknqliiiln*ikniivmviiiikkmiknqvfyhlpiqnl*iiemmimkkf
mktiiimnflmvsilvtqqlekekfkkekknrlkkkeylleylfvk*ink*iitiiknki
ki*finnikk
Translated Amino Acid sequence (All Frames) 
Frame A:
v*inhqhfgnvlhvkird*liqyf*mkilvkrlsmi*lisymerngipilvylidvviyc
mvhrdraklhl---

---qsiqnwkilklvplnykvghyss*ftfksftnl**fhysmyi*nyfk**nykrnvr*
*n*il*****rrin***y*ik*ki***w***lskr**ktkcfitfqfrifr**k****rn
l*rq****tf*w*vyw*lnn*kkkslkrkkkid*kkknif*nifl*nk*ink**l**kik
*ksnllii*kk

Frame B:
frsiinilgmycmsk*eis*fsifr*ky**kgcq*fd*fhtwkemvyrywctl*twlfiv
wstgigqnfi---

---nqfkigkssn*yrsitrlviihrnsplnllptcddfitqctsettsndkitkemldd
eiksyddddeeesinnniklnkkynsngnnnyqkddkkpsvlspsnsesldnrnddneei
yednnnnelfdgkytgnsttrkrkv*kgkkk*iekkrisfrisfckink*innnynkk*n
knliy**ykkk

Frame C:
LDQSSTFWECIACQNKRLVDSVFLDENISEKVVNDLTNFIHGKKWYTDTGVPYRRGYLLY
GPPGSGKTSF---

---INSKLENPQISTAQLQGWSLFIVIHL*ifyqlvmisllnvhlkllqmiklqkkc*mm
klnlmmmmmkknqliiiln*ikniivmviiiikkmiknqvfyhlpiqnl*iiemmimkkf
mktiiimnflmvsilvtqqlekekfkkekknrlkkkeylleylfvk*ink*iitiiknki
ki*finnikk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLI271 (SLI271Q) /CSM/SL/SLI2-C/SLI271Q.Seq.d/                        791   0.0
SLI716 (SLI716Q) /CSM/SL/SLI7-A/SLI716Q.Seq.d/                        246   4e-64
VHL194 (VHL194Q) /CSM/VH/VHL1-D/VHL194Q.Seq.d/                         42   0.013
VHE389 (VHE389Q) /CSM/VH/VHE3-D/VHE389Q.Seq.d/                         42   0.013
VFD294 (VFD294Q) /CSM/VF/VFD2-D/VFD294Q.Seq.d/                         42   0.013
VFB656 (VFB656Q) /CSM/VF/VFB6-C/VFB656Q.Seq.d/                         42   0.013
SSM282 (SSM282Q) /CSM/SS/SSM2-D/SSM282Q.Seq.d/                         42   0.013
SSI193 (SSI193Q) /CSM/SS/SSI1-D/SSI193Q.Seq.d/                         42   0.013
SSF124 (SSF124Q) /CSM/SS/SSF1-A/SSF124Q.Seq.d/                         42   0.013
SSE456 (SSE456Q) /CSM/SS/SSE4-C/SSE456Q.Seq.d/                         42   0.013
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC004688|AC004688.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    38  8e-05  8
AC116985|AC116985.2 Dictyostelium discoideum chromosome 2 map 6135249-6143598 strain AX4, complete sequence.    42  8e-04  3
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    42  0.007  6
AC005308|AC005308.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    38  0.008  9
AC117314|AC117314.4 Rattus norvegicus clone CH230-315F13, WORKING DRAFT SEQUENCE, 1 ordered piece.    38  0.012  5
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    42  0.024  5
J04643|J04643.1 P.falciparum dihydrofolate reductase-thymidylate synthase (DHFR-TS) gene, complete cds.    42  0.034  2
J03772|J03772.1 Plasmodium falciparum (clone HB3) dihydrofolate reductase/thymidylate synthase (DHFR-TS) gene, complete cds.    42  0.034  2
M22159|M22159.1 P.falciparum dihydrofolate reductase-thymidylate synthetase (DHFR-TS) gene, complete cds.    42  0.037  2
J03028|J03028.1 P.falciparum dihydrofolate reductase-thymidylate synthase gene, complete cds.    42  0.040  2
dna update 2003. 8.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FN392321_112(FN392321|pid:none) Pichia pastoris GS115 chromosome...    84   4e-15
CR380947_120(CR380947|pid:none) Candida glabrata strain CBS138 c...    82   1e-14
AM270022_42(AM270022|pid:none) Aspergillus niger contig An02c027...    82   1e-14
CR848645_1(CR848645|pid:none) Xenopus tropicalis finished cDNA, ...    81   3e-14
CR382125_103(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    81   3e-14
(Q7ZTL7) RecName: Full=Mitochondrial chaperone BCS1; AltName: Fu...    81   4e-14
(P32839) RecName: Full=Mitochondrial chaperone BCS1;  &S61170(S6...    81   4e-14
CU633438_246(CU633438|pid:none) Podospora anserina genomic DNA c...    79   2e-13
(Q7ZV60) RecName: Full=Mitochondrial chaperone BCS1; AltName: Fu...    79   2e-13
S47190_1(S47190|pid:none) Saccharomyces cerevisiae BCS1 gene, nu...    79   2e-13
protein update 2009. 6. 5
PSORT 

 psg: 0.75  gvh: 0.43  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 16.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: vesicles of secretory system
	  4.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for SLI271 is cyt
5' end seq. ID SLI271F
5' end seq. 
>SLI271F.Seq
GTTTAGATCAATCATCAACATTTTGGGAATGTATTGCATGTCAAAATAAGAGATTAGTTG
ATTCAGTATTTTTAGATGAAAATATTAGTGAAAAGGTTGTCAATGATTTGACTAATTTCA
TACATGGAAAGAAATGGTATACCGATACTGGTGTACCTTATAGACGTGGTTATTTATTGT
ATGGTCCACCGGGATCGGGCAAAACTTCATTTA----------
Length of 5' end seq. 213
3' end seq. ID SLI271Z
3' end seq. 
>SLI271Z.Seq
----------CAATCAATTCAAAATTGGAAAATCCTCAAATTAGTACCGCTCAATTACAA
GGTTGGTCATTATTCATCGTAATTCACCTTTAAATCTTTTACCAACTTGTGATGATTTCA
TTACTCAATGTACATCTGAAACTACTTCAAATGATAAAATTACAAAAGAAATGTTAGATG
ATGAAATTAAATCTTATGATGATGATGATGAAGAAGAATCAATTAATAATAATATTAAAT
TAAATAAAAAATATAATAGTAATGGTAATAATAATTATCAAAAAGATGATAAAAAACCAA
GTGTTTTATCACCTTCCAATTCAGAATCTTTAGATAATAGAAATGATGATAATGAAGAAA
TTTATGAAGACAATAATAATAATGAACTTTTTGATGGTAAGTATACTGGTAACTCAACAA
CTAGAAAAAGAAAAGTTTAAAAAGGAAAAAAAAAATAGATTGAAAAAAAAAGAATATCTT
TTAGAATATCTTTTTGTAAAATAAATAAATAAATAAATAATAACTATAATAAAAAATAAA
ATAAAAATCTAATTTATTAATAATATAAAAAAAAA
Length of 3' end seq. 565
Connected seq. ID SLI271P
Connected seq. 
>SLI271P.Seq
GTTTAGATCAATCATCAACATTTTGGGAATGTATTGCATGTCAAAATAAGAGATTAGTTG
ATTCAGTATTTTTAGATGAAAATATTAGTGAAAAGGTTGTCAATGATTTGACTAATTTCA
TACATGGAAAGAAATGGTATACCGATACTGGTGTACCTTATAGACGTGGTTATTTATTGT
ATGGTCCACCGGGATCGGGCAAAACTTCATTTA----------CAATCAATTCAAAATTG
GAAAATCCTCAAATTAGTACCGCTCAATTACAAGGTTGGTCATTATTCATCGTAATTCAC
CTTTAAATCTTTTACCAACTTGTGATGATTTCATTACTCAATGTACATCTGAAACTACTT
CAAATGATAAAATTACAAAAGAAATGTTAGATGATGAAATTAAATCTTATGATGATGATG
ATGAAGAAGAATCAATTAATAATAATATTAAATTAAATAAAAAATATAATAGTAATGGTA
ATAATAATTATCAAAAAGATGATAAAAAACCAAGTGTTTTATCACCTTCCAATTCAGAAT
CTTTAGATAATAGAAATGATGATAATGAAGAAATTTATGAAGACAATAATAATAATGAAC
TTTTTGATGGTAAGTATACTGGTAACTCAACAACTAGAAAAAGAAAAGTTTAAAAAGGAA
AAAAAAAATAGATTGAAAAAAAAAGAATATCTTTTAGAATATCTTTTTGTAAAATAAATA
AATAAATAAATAATAACTATAATAAAAAATAAAATAAAAATCTAATTTATTAATAATATA
AAAAAAAA
Length of connected seq. 778
Full length Seq ID -
Full length Seq. -
Length of full length seq. -