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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLI263
Library SL
(Link to library)
Clone ID SLI263
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16510-1
Original site URL
Representative seq. ID SLI263Z
(Link to Original site)
Representative DNA sequence 
>SLI263 (SLI263Q) /CSM/SL/SLI2-C/SLI263Q.Seq.d/
XXXXXXXXXXCTTCACCATCATCATCTGCTGCAAGCTCTTCTCCATCTTCATCTGCTGCA
AGCTCTTCTCCATCTTCATCTGCTGCAAGCTCTTCCCCATCTTCATCTGCATCATCAAGC
TCTTCCCCATCTTCATCTGCATCATCAAGCTCTGCCCCATCTTCATCTGCATCATCAAGC
TCTGCTCCATCTTCATCTGCATCATCTTCATCTGCATCATCTTCATCTGCATCATCTGCA
GCAACTACAGCTGCAACTACAATTGCAACTACAGCTGCAACTACAACTGCAACTACAACC
GCAACCACAGCTACAACCACAGCCACAACCACAGCTACAACCACAGCTGCAACCATAGCT
ACAACCACAGCTGCAACTACAACTGCAACTACAACCGCAACCACAGCTACAACCACAGCT
ACAACCACAGCTACCTCTTAAATTTAATCAAAAAACATTTTTTATCAAGTATCACTACAA
TAATAATTTTAATAATAATAGTATCAAAAAATGATATTAAAAATCCCCTTTTTTTCTCTA
TAATTTTTAAATTAAATATAAAATAAA
sequence update 1998.10.12
Translated Amino Acid sequence 
---FTIIICCKLFSIFICCKLFSIFICCKLFPIFICIIKLFPIFICIIKLCPIFICIIKL
CSIFICIIFICIIFICIICSNYSCNYNCNYSCNYNCNYNRNHSYNHSHNHSYNHSCNHSY
NHSCNYNCNYNRNHSYNHSYNHSYLLNLIKKHFLSSITTIIILIIIVSKNDIKNPLFFSI
IFKLNIK*
Translated Amino Acid sequence (All Frames) 
Frame A:
---FTIIICCKLFSIFICCKLFSIFICCKLFPIFICIIKLFPIFICIIKLCPIFICIIKL
CSIFICIIFICIIFICIICSNYSCNYNCNYSCNYNCNYNRNHSYNHSHNHSYNHSCNHSY
NHSCNYNCNYNRNHSYNHSYNHSYLLNLIKKHFLSSITTIIILIIIVSKNDIKNPLFFSI
IFKLNIK*


Frame B:
---spsssaassspsssaassspsssaassspsssassssspsssassssapsssassss
apsssassssassssassaattaattiattaatttatttattatttatttatttaatiat
ttaatttatttattatttatttats*i*sknifyqvslq**f****yqkmilkipffsl*
fln*i*nk


Frame C:
---hhhhllqallhlhllqallhlhllqalphlhlhhqalphlhlhhqalphlhlhhqal
lhlhlhhlhlhhlhlhhlqqlqlqlqlqlqlqlqlqlqpqpqlqpqpqpqlqpqlqp*lq
pqlqlqlqlqpqpqlqpqlqpqlplkfnqktffikyhynnnfnnnsikk*y*kspfflyn
f*ikyki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSB820 (SSB820Q) /CSM/SS/SSB8-A/SSB820Q.Seq.d/                        609   e-173
SLK165 (SLK165Q) /CSM/SL/SLK1-C/SLK165Q.Seq.d/                        609   e-173
SLI557 (SLI557Q) /CSM/SL/SLI5-C/SLI557Q.Seq.d/                        609   e-173
SLI431 (SLI431Q) /CSM/SL/SLI4-B/SLI431Q.Seq.d/                        609   e-173
SLI263 (SLI263Q) /CSM/SL/SLI2-C/SLI263Q.Seq.d/                        609   e-173
SLH738 (SLH738Q) /CSM/SL/SLH7-B/SLH738Q.Seq.d/                        609   e-173
SLH548 (SLH548Q) /CSM/SL/SLH5-B/SLH548Q.Seq.d/                        609   e-173
SLH472 (SLH472Q) /CSM/SL/SLH4-C/SLH472Q.Seq.d/                        609   e-173
SLH386 (SLH386Q) /CSM/SL/SLH3-D/SLH386Q.Seq.d/                        609   e-173
SLH314 (SLH314Q) /CSM/SL/SLH3-A/SLH314Q.Seq.d/                        609   e-173
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU052966) Dictyostelium discoideum slug cDNA, clone SLF396.      313   e-133  3
(AU053262) Dictyostelium discoideum slug cDNA, clone SLI263.      313   e-133  3
(AU034176) Dictyostelium discoideum slug cDNA, clone SLC144.      313   e-133  3
(AU033450) Dictyostelium discoideum slug cDNA, clone SLA841.      313   e-133  3
(AU033594) Dictyostelium discoideum slug cDNA, clone SLB210.      313   e-133  3
(AU039267) Dictyostelium discoideum slug cDNA, clone SLH314.      313   e-133  3
(AU034754) Dictyostelium discoideum slug cDNA, clone SLE278.      313   e-133  3
(AU033712) Dictyostelium discoideum slug cDNA, clone SLB347.      313   e-133  3
(AU033708) Dictyostelium discoideum slug cDNA, clone SLB343.      313   e-133  3
(AU052278) Dictyostelium discoideum slug cDNA, clone SLA494.      313   e-133  3
dna update 2009. 6.23
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 153,097,129
protein update 2009. 6. 5
PSORT 

 psg: 0.97  gvh: 0.52  alm: 0.02  top: 0.53  tms: 0.27  mit: 0.62  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: endoplasmic reticulum
	 32.0 %: mitochondrial
	 20.0 %: plasma membrane
	  4.0 %: vacuolar
	  4.0 %: cytoplasmic

>> prediction for SLI263 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLI263Z
3' end seq. 
>SLI263Z.Seq
----------CTTCACCATCATCATCTGCTGCAAGCTCTTCTCCATCTTCATCTGCTGCA
AGCTCTTCTCCATCTTCATCTGCTGCAAGCTCTTCCCCATCTTCATCTGCATCATCAAGC
TCTTCCCCATCTTCATCTGCATCATCAAGCTCTGCCCCATCTTCATCTGCATCATCAAGC
TCTGCTCCATCTTCATCTGCATCATCTTCATCTGCATCATCTTCATCTGCATCATCTGCA
GCAACTACAGCTGCAACTACAATTGCAACTACAGCTGCAACTACAACTGCAACTACAACC
GCAACCACAGCTACAACCACAGCCACAACCACAGCTACAACCACAGCTGCAACCATAGCT
ACAACCACAGCTGCAACTACAACTGCAACTACAACCGCAACCACAGCTACAACCACAGCT
ACAACCACAGCTACCTCTTAAATTTAATCAAAAAACATTTTTTATCAAGTATCACTACAA
TAATAATTTTAATAATAATAGTATCAAAAAATGATATTAAAAATCCCCTTTTTTTCTCTA
TAATTTTTAAATTAAATATAAAATAAA
Length of 3' end seq. 557
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -