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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLI256
Library SL
(Link to library)
Clone ID SLI256
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13909-1
Original site URL
Representative seq. ID SLI256P
(Link to Original site)
Representative DNA sequence 
>SLI256 (SLI256Q) /CSM/SL/SLI2-C/SLI256Q.Seq.d/
ACTTTATGATTCCAAAAAAATATTGAAAAAATTACTTCATGAAAATAATATTCTCAAGAG
TGGTGGTCAATTACCAAACAAATCCGATATTCCAGGTTGTACCGGTAGTGAGGATGAAGA
TGAGGATGACTTTGATCAATTCGATCAACAACAACAAGATGGTAGCGCTGATCCAAGTAC
TCCAGTTGTTGAAACTGAACCTGATATTAGTGTATTGGTCGATAGATTACAAGTTGATAT
GAGTATCACCACTCAAGATGACTTAACCACAACTTTGAAACAATTCTACAGCACTTTGAA
AAATCGTCAAGATCTTTACATXXXXXXXXXXCTACCACCACTACCACTACCACCACCATC
AGTACCGATGTCGATATCTCAAATAATATCAGTAGTCCAGTTCAATCACATCTTGTACAA
CTTAGTGGTTTATTAGATAAATTAAAAGAAAATATTGACCATGAAAATGAAACTCTCATT
CAAACTTATGAAAAACTTGGTTTCATTTTATCTCCTTTCCAAGAAGCTTTATTCATCACT
AAAATCTATAATAACATTTTCTCTGAATCTTCTTATTCAAATATTCAAATGTTACATGGT
ATCAAAGATGCAATTCTTTATTCTTATGTTGATCCAACTTATACTTAAATTTTAATTTTA
TTTAGATAGGAAAAAAAA
sequence update 1999. 2.23
Translated Amino Acid sequence 
LYDSKKILKKLLHENNILKSGGQLPNKSDIPGCTGSEDEDEDDFDQFDQQQQDGSADPST
PVVETEPDISVLVDRLQVDMSITTQDDLTTTLKQFYSTLKNRQDLY---

---TTTTTTTTISTDVDISNNISSPVQSHLVQLSGLLDKLKENIDHENETLIQTYEKLGF
ILSPFQEALFITKIYNNIFSESSYSNIQMLHGIKDAILYSYVDPTYT*ililfr*ekk
Translated Amino Acid sequence (All Frames) 
Frame A:
tl*fqkniekits*k*ysqewwsitkqirysrlyr**g*r*g*l*sirstttrw*r*sky
ssc*n*t*y*cigr*its*yeyhhsr*lnhnfetilqhfekssrslh---

---lpplplpppsvpmsisqiisvvqfnhilynlvvy*in*kkiltmkmklsfklmknlv
sfyllskklysslksiitfslnlliqifkcymvskmqffilmliqlilkf*fyldrkk

Frame B:
LYDSKKILKKLLHENNILKSGGQLPNKSDIPGCTGSEDEDEDDFDQFDQQQQDGSADPST
PVVETEPDISVLVDRLQVDMSITTQDDLTTTLKQFYSTLKNRQDLY---

---yhhyhyhhhqyrcrylk*yq*sssitsctt*wfir*ikrky*p*k*nshsnl*ktwf
hfisfprsfihh*nl**hfl*iflfkysnvtwyqrcnslflc*snlylnfnfi*igkk

Frame C:
fmipkky*knyfmkiifsrvvvnyqtnpifqvvpvvrmkmrmtlinsinnnkmvaliqvl
qllklnlilvywsidykli*vsplkmt*pql*nnstal*kivkift---

---TTTTTTTTISTDVDISNNISSPVQSHLVQLSGLLDKLKENIDHENETLIQTYEKLGF
ILSPFQEALFITKIYNNIFSESSYSNIQMLHGIKDAILYSYVDPTYT*ililfr*ekk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLI256 (SLI256Q) /CSM/SL/SLI2-C/SLI256Q.Seq.d/                       1229   0.0
SLB492 (SLB492Q) /CSM/SL/SLB4-D/SLB492Q.Seq.d/                        672   0.0
CFF348 (CFF348Q) /CSM/CF/CFF3-B/CFF348Q.Seq.d/                        654   0.0
AFE157 (AFE157Q) /CSM/AF/AFE1-C/AFE157Q.Seq.d/                        642   0.0
AFM104 (AFM104Q) /CSM/AF/AFM1-A/AFM104Q.Seq.d/                        626   e-178
CHR177 (CHR177Q) /CSM/CH/CHR1-D/CHR177Q.Seq.d/                        617   e-175
CHR244 (CHR244Q) /CSM/CH/CHR2-B/CHR244Q.Seq.d/                        607   e-173
SFK577 (SFK577Q) /CSM/SF/SFK5-D/SFK577Q.Seq.d/                        599   e-170
SHD258 (SHD258Q) /CSM/SH/SHD2-C/SHD258Q.Seq.d/                        569   e-161
CHO501 (CHO501Q) /CSM/CH/CHO5-A/CHO501Q.Seq.d/                        563   e-159
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117345|AC117345.4 Rattus norvegicus clone CH230-40G3, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    52  1e-05  6
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    50  2e-04  7
AC125004|AC125004.3 Mus musculus clone RP23-364M15, WORKING DRAFT SEQUENCE, 8 unordered pieces.    46  5e-04  3
AL807800|AL807800.7 Mouse DNA sequence from clone RP23-438D2 on chromosome 2.    56  6e-04  3
AC112447|AC112447.5 Rattus norvegicus clone CH230-236I20, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    56  6e-04  1
AX489630|AX489630.1 Sequence 6930 from Patent WO02053728.         56  6e-04  1
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    46  6e-04  10
AC094313|AC094313.10 Rattus norvegicus clone CH230-3G9, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    48  8e-04  2
AC128200|AC128200.3 Rattus norvegicus clone CH230-33A7, WORKING DRAFT SEQUENCE, 4 unordered pieces.    48  8e-04  2
AC119075|AC119075.5 Rattus norvegicus clone CH230-35B8, WORKING DRAFT SEQUENCE, 5 unordered pieces.    48  9e-04  2
dna update 2003. 8.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000140_3147(CP000140|pid:none) Parabacteroides distasonis ATCC...    39   0.18
FM954973_654(FM954973|pid:none) Vibrio splendidus LGP32 chromoso...    35   2.6
CP001404_2744(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51...    34   3.5
BX538350_20(BX538350|pid:none) Cryptosporidium parvum chromosome...    34   4.5
AY465057_1(AY465057|pid:none) Cryptosporidium parvum chromosome ...    34   4.5
CP001399_2639(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,...    33   5.9
CP001400_2510(CP001400|pid:none) Sulfolobus islandicus M.14.25, ...    33   5.9
AY392538_1(AY392538|pid:none) Porcine enterovirus 8 isolate Po 5...    33   10.0
protein update 2009. 6. 5
PSORT 

 psg: 0.66  gvh: 0.34  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SLI256 is cyt
5' end seq. ID SLI256F
5' end seq. 
>SLI256F.Seq
ACTTTATGATTCCAAAAAAATATTGAAAAAATTACTTCATGAAAATAATATTCTCAAGAG
TGGTGGTCAATTACCAAACAAATCCGATATTCCAGGTTGTACCGGTAGTGAGGATGAAGA
TGAGGATGACTTTGATCAATTCGATCAACAACAACAAGATGGTAGCGCTGATCCAAGTAC
TCCAGTTGTTGAAACTGAACCTGATATTAGTGTATTGGTCGATAGATTACAAGTTGATAT
GAGTATCACCACTCAAGATGACTTAACCACAACTTTGAAACAATTCTACAGCACTTTGAA
AAATCGTCAAGATCTTTACAT----------
Length of 5' end seq. 321
3' end seq. ID SLI256Z
3' end seq. 
>SLI256Z.Seq
----------CTACCACCACTACCACTACCACCACCATCAGTACCGATGTCGATATCTCA
AATAATATCAGTAGTCCAGTTCAATCACATCTTGTACAACTTAGTGGTTTATTAGATAAA
TTAAAAGAAAATATTGACCATGAAAATGAAACTCTCATTCAAACTTATGAAAAACTTGGT
TTCATTTTATCTCCTTTCCAAGAAGCTTTATTCATCACTAAAATCTATAATAACATTTTC
TCTGAATCTTCTTATTCAAATATTCAAATGTTACATGGTATCAAAGATGCAATTCTTTAT
TCTTATGTTGATCCAACTTATACTTAAATTTTAATTTTATTTAGATAGGAAAAAAAA
Length of 3' end seq. 347
Connected seq. ID SLI256P
Connected seq. 
>SLI256P.Seq
ACTTTATGATTCCAAAAAAATATTGAAAAAATTACTTCATGAAAATAATATTCTCAAGAG
TGGTGGTCAATTACCAAACAAATCCGATATTCCAGGTTGTACCGGTAGTGAGGATGAAGA
TGAGGATGACTTTGATCAATTCGATCAACAACAACAAGATGGTAGCGCTGATCCAAGTAC
TCCAGTTGTTGAAACTGAACCTGATATTAGTGTATTGGTCGATAGATTACAAGTTGATAT
GAGTATCACCACTCAAGATGACTTAACCACAACTTTGAAACAATTCTACAGCACTTTGAA
AAATCGTCAAGATCTTTACAT----------CTACCACCACTACCACTACCACCACCATC
AGTACCGATGTCGATATCTCAAATAATATCAGTAGTCCAGTTCAATCACATCTTGTACAA
CTTAGTGGTTTATTAGATAAATTAAAAGAAAATATTGACCATGAAAATGAAACTCTCATT
CAAACTTATGAAAAACTTGGTTTCATTTTATCTCCTTTCCAAGAAGCTTTATTCATCACT
AAAATCTATAATAACATTTTCTCTGAATCTTCTTATTCAAATATTCAAATGTTACATGGT
ATCAAAGATGCAATTCTTTATTCTTATGTTGATCCAACTTATACTTAAATTTTAATTTTA
TTTAGATAGGAAAAAAAA
Length of connected seq. 668
Full length Seq ID -
Full length Seq. -
Length of full length seq. -