SLI252
Library SL
(Link to library)
Clone ID SLI252
Atlas ID
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11535-1
Original site URL
Representative seq. ID SLI252Z
(Link to Original site)
Representative DNA sequence
>SLI252 (SLI252Q) /CSM/SL/SLI2-C/SLI252Q.Seq.d/
XXXXXXXXXXTAATTGTAGATTAATAGCTTGTAAAGAAGGTGAATTCTGTATTGACAATA
TTGAAAACACTCCACCAAAATGTTATCCAAAATTATTGTGCAACCTATCAAAAATACCAC
CTGACTATTATTGTATATCTGATGAAATTAGAGGAGGATTCTATGTTAAATATGAATCAT
ATATTGATCTTTCATGTGAAACTTTATTATGTGAAGGTGTAAATAGTTATTGTGTTGAAA
ATGGTGGTCCAATTTGTAAAACTTGGCCAAATGATACAATTCAATATCAACCAAGTTGTG
ATAAATGTCCAAAAGATACAATGAGTTGTACTCCAAATGAAAATAGTAATAATAAAGGTG
TAGTTTGTAGAATTGATCGTCCATCTTGTTCAGTTATTCAATGTCCAGATAATCAATATT
GTGTAAACACTGACAAAGGTCCAAAATGTTATAAAAGATCAATAGAATGTAGTAATTCAA
GATGTCCTAGAGATTATACTTGTAAAAGAGATGAAATTAGAGGTGGTGCTTGTTTAAAAA
ATTAAAAAAATTAAAAAAATTAAAATTAAAAAAAATAAAATAAAAATAAATAAATACACA
AAAAAAAAAA
sequence update 1998. 8.22
Translated Amino Acid sequence
---NCRLIACKEGEFCIDNIENTPPKCYPKLLCNLSKIPPDYYCISDEIRGGFYVKYESY
IDLSCETLLCEGVNSYCVENGGPICKTWPNDTIQYQPSCDKCPKDTMSCTPNENSNNKGV
VCRIDRPSCSVIQCPDNQYCVNTDKGPKCYKRSIECSNSRCPRDYTCKRDEIRGGACLKN
*kn*kn*n*kk*nknk*ihkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---NCRLIACKEGEFCIDNIENTPPKCYPKLLCNLSKIPPDYYCISDEIRGGFYVKYESY
IDLSCETLLCEGVNSYCVENGGPICKTWPNDTIQYQPSCDKCPKDTMSCTPNENSNNKGV
VCRIDRPSCSVIQCPDNQYCVNTDKGPKCYKRSIECSNSRCPRDYTCKRDEIRGGACLKN
*kn*kn*n*kk*nknk*ihkkk


Frame B:
---ivd**lvkkvnsvltilktlhqnviqnycatyqkyhltiivylmkleedsmlnmnhi
lifhvklyyvkv*ivivlkmvvqfvklgqmiqfninqvvinvqkiq*vvlqmkiviikv*
fvelivhlvqlfnvqiiniv*tltkvqnvikdq*nvviqdvleiilvkemklevvlv*ki
kkikkikikknkikinkytkkk


Frame C:
---l*insl*rr*ily*qy*khstkmlskiivqpikntt*lllyi**n*rrilc*i*iiy
*sfm*nfim*rck*llc*kwwsnl*nlak*ynsistkl**mskrynelysk*k****rcs
l*n*ssilfsysmsr*silckh*qrskml*kinrm**fkms*rlyl*kr*n*rwclfkkl
kklkklklkkik*k*intqkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLI252 (SLI252Q) /CSM/SL/SLI2-C/SLI252Q.Seq.d/ 1039 0.0
CHQ226 (CHQ226Q) /CSM/CH/CHQ2-B/CHQ226Q.Seq.d/ 848 0.0
CHR615 (CHR615Q) /CSM/CH/CHR6-A/CHR615Q.Seq.d/ 821 0.0
CHL405 (CHL405Q) /CSM/CH/CHL4-A/CHL405Q.Seq.d/ 813 0.0
AHQ770 (AHQ770Q) /CSM/AH/AHQ7-C/AHQ770Q.Seq.d/ 797 0.0
AHP257 (AHP257Q) /CSM/AH/AHP2-C/AHP257Q.Seq.d/ 781 0.0
AHQ559 (AHQ559Q) /CSM/AH/AHQ5-C/AHQ559Q.Seq.d/ 765 0.0
CHJ386 (CHJ386Q) /CSM/CH/CHJ3-D/CHJ386Q.Seq.d/ 745 0.0
CHK853 (CHK853Q) /CSM/CH/CHK8-C/CHK853Q.Seq.d/ 729 0.0
CHK532 (CHK532Q) /CSM/CH/CHK5-B/CHK532Q.Seq.d/ 714 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU053259) Dictyostelium discoideum slug cDNA, clone SLI252. 1041 0.0 1
(BJ385230) Dictyostelium discoideum cDNA clone:ddc54c08, 3' ... 848 0.0 1
(BJ386107) Dictyostelium discoideum cDNA clone:ddc57m04, 3' ... 821 0.0 1
(BJ382250) Dictyostelium discoideum cDNA clone:ddc44j02, 3' ... 813 0.0 1
(BJ357772) Dictyostelium discoideum cDNA clone:dda64l17, 3' ... 797 0.0 1
(BJ356802) Dictyostelium discoideum cDNA clone:dda61a16, 3' ... 781 0.0 1
(BJ357733) Dictyostelium discoideum cDNA clone:dda64e15, 3' ... 763 0.0 1
(BJ381248) Dictyostelium discoideum cDNA clone:ddc40l21, 3' ... 745 0.0 1
(BJ382015) Dictyostelium discoideum cDNA clone:ddc43j14, 3' ... 729 0.0 1
(BJ381954) Dictyostelium discoideum cDNA clone:ddc43o07, 3' ... 714 0.0 1
dna update 2009. 6.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg... 56 9e-07
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 47 3e-04
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 47 3e-04
A49175(A49175;PH1570;S32113) Motch B protein - mouse (fragment) ... 45 0.002
AK155137_1(AK155137|pid:none) Mus musculus NOD-derived CD11c +ve... 45 0.002
BC172642_1(BC172642|pid:none) Synthetic construct Mus musculus c... 45 0.002
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor... 44 0.003
(Q04721) RecName: Full=Neurogenic locus notch homolog protein 2;... 44 0.003
AF308601_1(AF308601|pid:none) Homo sapiens NOTCH 2 (N2) mRNA, co... 44 0.003
AX357059_1(AX357059|pid:none) Sequence 21 from Patent EP1175909.... 44 0.003
protein update 2009. 6. 5
PSORT

psg: 0.60 gvh: 0.29 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: mitochondrial

>> prediction for SLI252 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLI252Z
3' end seq.
>SLI252Z.Seq
----------TAATTGTAGATTAATAGCTTGTAAAGAAGGTGAATTCTGTATTGACAATA
TTGAAAACACTCCACCAAAATGTTATCCAAAATTATTGTGCAACCTATCAAAAATACCAC
CTGACTATTATTGTATATCTGATGAAATTAGAGGAGGATTCTATGTTAAATATGAATCAT
ATATTGATCTTTCATGTGAAACTTTATTATGTGAAGGTGTAAATAGTTATTGTGTTGAAA
ATGGTGGTCCAATTTGTAAAACTTGGCCAAATGATACAATTCAATATCAACCAAGTTGTG
ATAAATGTCCAAAAGATACAATGAGTTGTACTCCAAATGAAAATAGTAATAATAAAGGTG
TAGTTTGTAGAATTGATCGTCCATCTTGTTCAGTTATTCAATGTCCAGATAATCAATATT
GTGTAAACACTGACAAAGGTCCAAAATGTTATAAAAGATCAATAGAATGTAGTAATTCAA
GATGTCCTAGAGATTATACTTGTAAAAGAGATGAAATTAGAGGTGGTGCTTGTTTAAAAA
ATTAAAAAAATTAAAAAAATTAAAATTAAAAAAAATAAAATAAAAATAAATAAATACACA
AAAAAAAAAA
Length of 3' end seq. 600
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -