>SLI236 (SLI236Q) /CSM/SL/SLI2-B/SLI236Q.Seq.d/
AAACAAAAAAAAAAAAAATAAAAAATAAAAAAAAGAAAAAGAAAATGTCCACATTAAAAA
AGTTTTCTATTAAAGGAGCGACAACAAGAATAAGGGATGGAGTTGGATTATATTTTGGTT
TAAACGAAGAACAAATACAACAACAACAACAACAACAACAACAACAACAACAGCAAAATA
GTGATAATAATCAAGCCGACAATAACAATAGTAGTAATAGTAATAATAATAATAGTTATT
ATGAAGAAGATGAACCATATTGGXXXXXXXXXXTGTGGTGTCGCTGGTAACTTGTGTAGT
GCTATCATGTTACCAAATTCAGTTCAAGTAGGTGCTTCTGGTGCTATCTTTGGATTTTTA
GGTGTACTTTTAACAGATTTAATCAGAAATTGGAGTGTTTAGCTAAACCTTGGTTAAATT
TTGGTTCACTATTATTTAGTATTATAACTTCTTTTGCTGTTGGTTTATTTTTACCAGGTG
TTGATAATTTTGCGCACTTAGGTGGTTTTATTGCAGGTATTTTAACAGCAGCAATTTTCT
TGCCATCATTAACACCAAAGAGAGCAATTGGAAAACGTTTACTTTTACTTATGATTGTAA
TTCCATTGACTGTAGCATTATTTGTAGCATTATTTGTTGTATTTTATAAAAATATAGATG
CAGATGAATGGTGTTTTGGTTGTAAATATATAACATGTCTTCAAGTATTAAGTTGGTGTA
AGACTTAAAAAAATTAAAGATATAACATTTAATTTTTACA

TKKKKIKNKKKKKKMSTLKKFSIKGATTRIRDGVGLYFGLNEEQIQQQQQQQQQQQQQNS
DNNQADNNNSSNSNNNNSYYEEDEPYW---

---CGVAGNLCSAIMLPNSVQVGASGAIFGFLGVLLTDLIRNWSV*lnlg*ilvhyylvl
*lllllvyfyqvliilrt*vvllqvf*qqqfschh*hqreqlenvyfyl*l*fh*l*hyl
*hyllyfiki*mqmngvlvvni*hvfky*vgvrlkkikditfnfy

Frame A:
kqkkkk*kikkrkrkcph*ksfllkerqqe*gmeldyilv*tknkynnnnnnnnnnnski
viiikptitivviviiiivimkkmnhi---

---CGVAGNLCSAIMLPNSVQVGASGAIFGFLGVLLTDLIRNWSV*lnlg*ilvhyylvl
*lllllvyfyqvliilrt*vvllqvf*qqqfschh*hqreqlenvyfyl*l*fh*l*hyl
*hyllyfiki*mqmngvlvvni*hvfky*vgvrlkkikditfnfy

Frame B:
nkkkknkk*kkekenvhikkvfy*rsdnknkgwswiifwfkrrtnttttttttttttak*
***ssrq*q*********ll*rr*til---

---vvslvtcvvlscyqiqfk*vllvlsldf*vyf*qi*seigvfs*tlvkfwftii*yy
nffccwfiftrc**fcalrwfycryfnssnflaiintkesnwktftftydcnsidcsiic
siiccil*kyrcr*mvfwl*iynmsssiklv*dlkklki*hlift

Frame C:
TKKKKIKNKKKKKKMSTLKKFSIKGATTRIRDGVGLYFGLNEEQIQQQQQQQQQQQQQNS
DNNQADNNNSSNSNNNNSYYEEDEPYW---

---wcrw*lv*cyhvtkfsssrcfwcylwifrctfnrfnqkleclakpwlnfgsllfsii
tsfavglflpgvdnfahlggfiagiltaaiflpsltpkraigkrllllmivipltvalfv
alfvvfyknidadewcfgckyitclqvlswckt*kn*ryni*fl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLI236 (SLI236Q) /CSM/SL/SLI2-B/SLI236Q.Seq.d/                        938   0.0
SHG510 (SHG510Q) /CSM/SH/SHG5-A/SHG510Q.Seq.d/                        720   0.0
SLA136 (SLA136Q) /CSM/SL/SLA1-B/SLA136Q.Seq.d/                        698   0.0
SFD377 (SFD377Q) /CSM/SF/SFD3-D/SFD377Q.Seq.d/                        660   0.0
SFJ204 (SFJ204Q) /CSM/SF/SFJ2-A/SFJ204Q.Seq.d/                        620   e-177
CHC468 (CHC468Q) /CSM/CH/CHC4-C/CHC468Q.Seq.d/                        462   e-129
SSM618 (SSM618Q) /CSM/SS/SSM6-A/SSM618Q.Seq.d/                         40   0.048
SSJ702 (SSJ702Q) /CSM/SS/SSJ7-A/SSJ702Q.Seq.d/                         40   0.048
SSA183 (SSA183Q) /CSM/SS/SSA1-D/SSA183Q.Seq.d/                         40   0.048
FC-AY01 (FC-AY01Q) /CSM/FC/FC-AY/FC-AY01Q.Seq.d/                       40   0.048

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL035476|AL035476.7 Plasmodium falciparum MAL4P3.                 46  0.059  6
AL271285|AL271285.1 Tetraodon nigroviridis genome survey sequence PUC-Ori end of clone  077G21 of library G from Tetraodon nigroviridis.    48  0.16  1
AL303663|AL303663.1 Tetraodon nigroviridis genome survey sequence T7 end of clone 003K03 of library H from Tetraodon nigroviridis.    48  0.16  1
AC025974|AC025974.3 Homo sapiens chromosome 11 clone RP11-320L11 map 11, WORKING DRAFT SEQUENCE, 25 unordered pieces.    40  0.25  5
AC120996|AC120996.4 Rattus norvegicus clone CH230-385D20, WORKING DRAFT SEQUENCE, 1 ordered piece.    46  0.63  1
AC118084|AC118084.6 Rattus norvegicus clone CH230-59H21, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46  0.63  1
AC111453|AC111453.5 Rattus norvegicus clone CH230-203E20, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    46  0.63  1
AZ564859|AZ564859.1 200PvD07 Pv MBN #16 (amplified twice) Plasmodium vivax genomic 3', DNA sequence.    46  0.63  1
AZ549282|AZ549282.1 ENTDQ36TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    34  0.88  2
AC118108|AC118108.6 Rattus norvegicus clone CH230-299J12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46  0.91  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC079029_15(AC079029|pid:none) Oryza sativa chromosome 10 BAC OS...    58   2e-16
AK061038_1(AK061038|pid:none) Oryza sativa Japonica Group cDNA c...    58   2e-16
AM434817_3(AM434817|pid:none) Vitis vinifera contig VV78X099660....    55   5e-15
AL163652_19(AL163652|pid:none) Arabidopsis thaliana DNA chromoso...    53   8e-15
EU973622_1(EU973622|pid:none) Zea mays clone 403131 membrane pro...    52   2e-14
AM439771_2(AM439771|pid:none) Vitis vinifera contig VV78X072918....    53   2e-14
BT051972_1(BT051972|pid:none) Medicago truncatula clone MTYF9_FA...    52   2e-14
AK061443_1(AK061443|pid:none) Oryza sativa Japonica Group cDNA c...    52   4e-14
EU970045_1(EU970045|pid:none) Zea mays clone 339014 membrane pro...    50   2e-13
AB195671_1(AB195671|pid:none) Arabidopsis thaliana mRNA for Rhom...    51   2e-13

 psg: 0.47  gvh: 0.37  alm: 0.31  top: 0.80  tms: 0.07  mit: 0.43  mip: 0.06
 nuc: 0.16  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SLI236 is cyt

>SLI236F.Seq
AAACAAAAAAAAAAAAAATAAAAAATAAAAAAAAGAAAAAGAAAATGTCCACATTAAAAA
AGTTTTCTATTAAAGGAGCGACAACAAGAATAAGGGATGGAGTTGGATTATATTTTGGTT
TAAACGAAGAACAAATACAACAACAACAACAACAACAACAACAACAACAACAGCAAAATA
GTGATAATAATCAAGCCGACAATAACAATAGTAGTAATAGTAATAATAATAATAGTTATT
ATGAAGAAGATGAACCATATTGG----------

>SLI236Z.Seq
----------TGTGGTGTCGCTGGTAACTTGTGTAGTGCTATCATGTTACCAAATTCAGT
TCAAGTAGGTGCTTCTGGTGCTATCTTTGGATTTTTAGGTGTACTTTTAACAGATTTAAT
CAGAAATTGGAGTGTTTAGCTAAACCTTGGTTAAATTTTGGTTCACTATTATTTAGTATT
ATAACTTCTTTTGCTGTTGGTTTATTTTTACCAGGTGTTGATAATTTTGCGCACTTAGGT
GGTTTTATTGCAGGTATTTTAACAGCAGCAATTTTCTTGCCATCATTAACACCAAAGAGA
GCAATTGGAAAACGTTTACTTTTACTTATGATTGTAATTCCATTGACTGTAGCATTATTT
GTAGCATTATTTGTTGTATTTTATAAAAATATAGATGCAGATGAATGGTGTTTTGGTTGT
AAATATATAACATGTCTTCAAGTATTAAGTTGGTGTAAGACTTAAAAAAATTAAAGATAT
AACATTTAATTTTTACA

>SLI236P.Seq
AAACAAAAAAAAAAAAAATAAAAAATAAAAAAAAGAAAAAGAAAATGTCCACATTAAAAA
AGTTTTCTATTAAAGGAGCGACAACAAGAATAAGGGATGGAGTTGGATTATATTTTGGTT
TAAACGAAGAACAAATACAACAACAACAACAACAACAACAACAACAACAACAGCAAAATA
GTGATAATAATCAAGCCGACAATAACAATAGTAGTAATAGTAATAATAATAATAGTTATT
ATGAAGAAGATGAACCATATTGG----------TGTGGTGTCGCTGGTAACTTGTGTAGT
GCTATCATGTTACCAAATTCAGTTCAAGTAGGTGCTTCTGGTGCTATCTTTGGATTTTTA
GGTGTACTTTTAACAGATTTAATCAGAAATTGGAGTGTTTAGCTAAACCTTGGTTAAATT
TTGGTTCACTATTATTTAGTATTATAACTTCTTTTGCTGTTGGTTTATTTTTACCAGGTG
TTGATAATTTTGCGCACTTAGGTGGTTTTATTGCAGGTATTTTAACAGCAGCAATTTTCT
TGCCATCATTAACACCAAAGAGAGCAATTGGAAAACGTTTACTTTTACTTATGATTGTAA
TTCCATTGACTGTAGCATTATTTGTAGCATTATTTGTTGTATTTTATAAAAATATAGATG
CAGATGAATGGTGTTTTGGTTGTAAATATATAACATGTCTTCAAGTATTAAGTTGGTGTA
AGACTTAAAAAAATTAAAGATATAACATTTAATTTTTACA