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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLI223
Library SL
(Link to library)
Clone ID SLI223
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15456-1
Original site URL
Representative seq. ID SLI223Z
(Link to Original site)
Representative DNA sequence 
>SLI223 (SLI223Q) /CSM/SL/SLI2-A/SLI223Q.Seq.d/
XXXXXXXXXXATTAGGTGCTGTCATCGTTAAGATGGTNAAGGTGTCTTCTCTGATTGTAG
CGTTATCAACACCTTACCCNAATGTTACCATCACCGTTGCTGGTCGTGAATTTGTTTTAA
CTCCAAAANNTATACGTTTTAGAAGTTACTGAGTTCGGAAAGACTGAATGTTTGAGTGGA
TTTATGGGTATCGAGTTAAACATGGGAAATTTCGTGGATCCTTGGTGATGTTTTCATCTC
TGCTTACTATACTGTATTCGATTTTGGTAATAAACAAGTTGGTTTCGCAATCTGCCATTC
AAGGTTAAATTTTTTTAATTAATTTATATTTAAGATAGAAATAAAACTAAATAATAGAAC
AATATATGTGCATTGTTTTTTTTTAATATA
sequence update 1998. 8.22
Translated Amino Acid sequence 
---LGAVIVKMVKVSSLIVALSTPYPNVTITVAGREFVLTPKXIRFRSY*vrkd*mfewi
ygyrvkhgkfrgslvmfsslltilysilvinklvsqsaiqg*iflinlylr*k*n*iieq
ymcivff*y
Translated Amino Acid sequence (All Frames) 
Frame A:
---LGAVIVKMVKVSSLIVALSTPYPNVTITVAGREFVLTPKXIRFRSY*vrkd*mfewi
ygyrvkhgkfrgslvmfsslltilysilvinklvsqsaiqg*iflinlylr*k*n*iieq
ymcivff*y


Frame B:
---*vlsslrwxrcll*l*ryqhltxmlpspllvvnlf*lqxxyvlevtefgkteclsgf
mgielnmgnfvdpw*cfhlcllycirfw**tswfrnlpfkvkff*liyi*drnktk**nn
icalfffni


Frame C:
---rcchr*dgxgvfsdcsvintlpxcyhhrcws*icfnskxytf*kllsserlnv*vdl
wvss*tweiswilgdvfisayytvfdfgnkqvgfaichsrlnffn*fifkieiklnnrti
yvhcffli
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLI223 (SLI223Q) /CSM/SL/SLI2-A/SLI223Q.Seq.d/                        658   0.0
VSE627 (VSE627Q) /CSM/VS/VSE6-B/VSE627Q.Seq.d/                        563   e-160
VSE257 (VSE257Q) /CSM/VS/VSE2-C/VSE257Q.Seq.d/                        563   e-160
VSC420 (VSC420Q) /CSM/VS/VSC4-A/VSC420Q.Seq.d/                        563   e-160
VSC349 (VSC349Q) /CSM/VS/VSC3-C/VSC349Q.Seq.d/                        563   e-160
VSA225 (VSA225Q) /CSM/VS/VSA2-B/VSA225Q.Seq.d/                        563   e-160
VFL614 (VFL614Q) /CSM/VF/VFL6-A/VFL614Q.Seq.d/                        563   e-160
VFK838 (VFK838Q) /CSM/VF/VFK8-B/VFK838Q.Seq.d/                        563   e-160
VFI679 (VFI679Q) /CSM/VF/VFI6-D/VFI679Q.Seq.d/                        563   e-160
VFH537 (VFH537Q) /CSM/VF/VFH5-B/VFH537Q.Seq.d/                        563   e-160
own update 2001.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU053245) Dictyostelium discoideum slug cDNA, clone SLI223.      569   0.0    2
(AJ243946) Dictyostelium discoideum ctsD gene for cathepsin ...   163   e-156  7
(Y16962) Dictyostelium discoideum mRNA for cathepsin D.           163   e-156  7
(BJ431440) Dictyostelium discoideum cDNA clone:ddv14n04, 3' ...   163   e-156  7
(BJ434264) Dictyostelium discoideum cDNA clone:ddv16i09, 3' ...   163   e-156  7
(BJ434529) Dictyostelium discoideum cDNA clone:ddv24k04, 3' ...   163   e-156  7
(BJ431493) Dictyostelium discoideum cDNA clone:ddv14j12, 3' ...   163   e-156  7
(AU262551) Dictyostelium discoideum vegetative cDNA clone:VS...   163   e-156  7
(C23684) Dictyostelium discoideum gamete cDNA, clone FC-AE09.     163   e-156  7
(BJ432515) Dictyostelium discoideum cDNA clone:ddv18m20, 3' ...   163   e-156  7
dna update 2009. 6.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ131585_1(DQ131585|pid:none) Opisthorchis viverrini cathepsin D...    47   7e-10
DQ909010_1(DQ909010|pid:none) Clonorchis sinensis aspartic prote...    47   7e-10
BT080419_1(BT080419|pid:none) Caligus clemensi clone ccle-evs-50...    45   2e-09
AB078420_1(AB078420|pid:none) Brugia malayi asp-2 mRNA for aspar...    49   3e-09
EF193385_1(EF193385|pid:none) Musca domestica aspartic proteinas...    47   4e-09
EF070454_1(EF070454|pid:none) Maconellicoccus hirsutus clone WHM...    47   6e-09
(Q03168) RecName: Full=Lysosomal aspartic protease;          EC=...    45   1e-08
AB106552_1(AB106552|pid:none) Todarodes pacificus tpaD mRNA for ...    48   2e-08
AF420068_1(AF420068|pid:none) Clonorchis sinensis aspartic prote...    44   4e-08
AK159580_1(AK159580|pid:none) Mus musculus osteoclast-like cell ...    45   5e-08
protein update 2009. 6. 5
PSORT 

 psg: 0.93  gvh: 0.44  alm: 0.30  top: 0.47  tms: 0.07  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SLI223 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLI223Z
3' end seq. 
>SLI223Z.Seq
----------ATTAGGTGCTGTCATCGTTAAGATGGTNAAGGTGTCTTCTCTGATTGTAG
CGTTATCAACACCTTACCCNAATGTTACCATCACCGTTGCTGGTCGTGAATTTGTTTTAA
CTCCAAAANNTATACGTTTTAGAAGTTACTGAGTTCGGAAAGACTGAATGTTTGAGTGGA
TTTATGGGTATCGAGTTAAACATGGGAAATTTCGTGGATCCTTGGTGATGTTTTCATCTC
TGCTTACTATACTGTATTCGATTTTGGTAATAAACAAGTTGGTTTCGCAATCTGCCATTC
AAGGTTAAATTTTTTTAATTAATTTATATTTAAGATAGAAATAAAACTAAATAATAGAAC
AATATATGTGCATTGTTTTTTTTTAATATA
Length of 3' end seq. 380
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -