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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLI203
Library SL
(Link to library)
Clone ID SLI203
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16463-1
Original site URL
Representative seq. ID SLI203Z
(Link to Original site)
Representative DNA sequence 
>SLI203 (SLI203Q) /CSM/SL/SLI2-A/SLI203Q.Seq.d/
XXXXXXXXXXATTGAACCATCACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCC
AGATACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATT
CGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAA
TGGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGA
ATTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCC
AAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATC
TCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGT
TCGTGCCGTTTCAAACTTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTATGTAAGGG
TCTTGGTATTGATGTTAATGATGTCATCAAATTCGCTGCTAGATCAAACTTGTAAATCAA
TATATTAAAAATAATAAAAAAATAAAAAAATAAAAAAAAATAAAAAATT
sequence update 1998. 8.22
Translated Amino Acid sequence 
---EPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAVNGNG
GKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSEDAKSR
FVSNLVGHMSGVTIKEIQVRAVSNFYKADKDLGARLCKGLGIDVNDVIKFAARSNL*ini
lkiikk*knkkk*ki
Translated Amino Acid sequence (All Frames) 
Frame A:
---lnhhqircykvvssliqiliviv*v*tinksqsivhsp*rvvlkttnvmvswlsmvm
vvkvqtinqtlsvvqshiqnllninltslvsllvnhtiiqmttlfnqviyidsclkmpnl
vssli*svtcpvspskkfkfvpfqtftrltki*vlvyvrvlvlmlmmssnslldqtcksi
y*k**knkkikknkk


Frame B:
---*titr*dvtrsslllsryssssfrcklstnpsqlsirrkgwc*klpt*wfhgcqw*w
w*rsklstklfrwsratsricst*i*rlwfrcsstiqssk*rlcstr*fi*thv*rcqis
frl*fsrshvrchhqrnssscrfkllqg*qrfrcsfm*gswy*c**chqirc*iklvnqy
iknnkkikk*kkikn


Frame C:
---EPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAVNGNG
GKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSEDAKSR
FVSNLVGHMSGVTIKEIQVRAVSNFYKADKDLGARLCKGLGIDVNDVIKFAARSNL*ini
lkiikk*knkkk*ki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLI203 (SLI203Q) /CSM/SL/SLI2-A/SLI203Q.Seq.d/                       1063   0.0
SLH603 (SLH603Q) /CSM/SL/SLH6-A/SLH603Q.Seq.d/                       1063   0.0
SLB111 (SLB111Q) /CSM/SL/SLB1-A/SLB111Q.Seq.d/                       1063   0.0
SLA574 (SLA574Q) /CSM/SL/SLA5-D/SLA574Q.Seq.d/                       1063   0.0
SFK763 (SFK763Q) /CSM/SF/SFK7-C/SFK763Q.Seq.d/                       1063   0.0
SFK640 (SFK640Q) /CSM/SF/SFK6-B/SFK640Q.Seq.d/                       1063   0.0
SFJ685 (SFJ685Q) /CSM/SF/SFJ6-D/SFJ685Q.Seq.d/                       1063   0.0
SFJ171 (SFJ171Q) /CSM/SF/SFJ1-C/SFJ171Q.Seq.d/                       1063   0.0
SFC295 (SFC295Q) /CSM/SF/SFC2-D/SFC295Q.Seq.d/                       1063   0.0
FC-AH16 (FC-AH16Q) /CSM/FC/FC-AH/FC-AH16Q.Seq.d/                     1063   0.0
own update 2003. 6.12
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AF090443) Dictyostelium discoideum catalase (cat) mRNA, com...  1061   0.0    1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...  1061   0.0    1
(AU060207) Dictyostelium discoideum slug cDNA, clone SLA574.     1061   0.0    1
(AU053237) Dictyostelium discoideum slug cDNA, clone SLI203.     1061   0.0    1
(AU039343) Dictyostelium discoideum slug cDNA, clone SLH603.     1061   0.0    1
(AU033506) Dictyostelium discoideum slug cDNA, clone SLB111.     1061   0.0    1
(C23765) Dictyostelium discoideum gamete cDNA, clone FC-AH16.    1061   0.0    1
(BJ402215) Dictyostelium discoideum cDNA clone:dds20i22, 3' ...  1061   0.0    1
(BJ401870) Dictyostelium discoideum cDNA clone:dds19m17, 3' ...  1061   0.0    1
(BJ401264) Dictyostelium discoideum cDNA clone:dds22n15, 3' ...  1061   0.0    1
dna update 2009. 6.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF090443_1(AF090443|pid:none) Dictyostelium discoideum catalase ...   362   4e-99
CP000300_481(CP000300|pid:none) Methanococcoides burtonii DSM 62...   185   7e-46
(O93662) RecName: Full=Catalase;          EC=1.11.1.6;  &AJ00593...   182   6e-45
CQ796333_1(CQ796333|pid:none) Sequence 109 from Patent WO2004027...   173   3e-42
AE017333_3935(AE017333|pid:none) Bacillus licheniformis DSM 13, ...   173   3e-42
CP000560_826(CP000560|pid:none) Bacillus amyloliquefaciens FZB42...   168   1e-40
AY378080_1(AY378080|pid:none) Tetrahymena thermophila putative c...   161   1e-38
AL009126_914(AL009126|pid:none) Bacillus subtilis subsp. subtili...   160   2e-38
(P26901) RecName: Full=Vegetative catalase;          EC=1.11.1.6...   160   2e-38
BC086479_1(BC086479|pid:none) Xenopus laevis hypothetical LOC495...   154   1e-36
protein update 2009. 6. 5
PSORT 

 psg: 0.70  gvh: 0.21  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SLI203 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLI203Z
3' end seq. 
>SLI203Z.Seq
----------ATTGAACCATCACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCC
AGATACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATT
CGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAA
TGGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGA
ATTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCC
AAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATC
TCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGT
TCGTGCCGTTTCAAACTTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTATGTAAGGG
TCTTGGTATTGATGTTAATGATGTCATCAAATTCGCTGCTAGATCAAACTTGTAAATCAA
TATATTAAAAATAATAAAAAAATAAAAAAATAAAAAAAAATAAAAAATT
Length of 3' end seq. 579
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -