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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLI202
Library SL
(Link to library)
Clone ID SLI202
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16101-1
Original site URL
Representative seq. ID SLI202P
(Link to Original site)
Representative DNA sequence 
>SLI202 (SLI202Q) /CSM/SL/SLI2-A/SLI202Q.Seq.d/
CAATGTTGATGTCGCTAAAGAAGTTAAAGTTTGTATGCAAAAAGTATTTGTTCAAGTATC
TGAATCATTTGATGAATATTCTTCATCTTCATCAAATGATTCAGATGAAGAATATTCAAC
TGATTCTATCATGTCAACATTTAAAGATGTAATTAAAAGAGTTACTGTTGAATACATTCA
AGAACAAAAAGAAAAACAACAACAACAACAAGAAAAAGAAGAXXXXXXXXXXGAAGAAAA
AGACCAAGAAGAAGAAGAAGAAGAAAAAGAAGTTGTTGTTGAAAGAAATAGTTACTATTG
CTGAAGAAGTTAAAGAAGAAGAAGTTGTTGTTGAAGAACCAGTCACTGTTGTTGAAGAAG
TTAAAGAAGAAAAACCAACACCAGCAATTGAAGAACCAGTTGTCGCTAAATCACAAACTG
TCGTTGATCCACTCTCTACTAAAGATGATGAAGATGATGACGACGATGAAGACGATTATG
ATGATATCAATGAAGAAGATCTTAAAAATATTGATGCCGAAATTGAAAAGATGCAACAAG
AAATGGGTGATGAACTTGAAGACGATGATGACGAAGAAGAAGAAAAAGAAAAAGAAACAG
CTCCAGTTGTTACTAAATCAGAAGTTGTTGATCCACTCTCATCTACTAAAGAAGAATCTG
AAGAAGAAGAAGAAGAGGAAACTAAAGTTGAAGTACCAGTTTTAGAAGAAGAAAAAGAAG
AAGAAGAAAAAGAAGAAGAAGAAAAAGAAGAAGAAGAAAAAGAAGAAGAA
sequence update 1999. 2.23
Translated Amino Acid sequence 
NVDVAKEVKVCMQKVFVQVSESFDEYSSSSSNDSDEEYSTDSIMSTFKDVIKRVTVEYIQ
EQKEKQQQQQEKE---

---KKKTKKKKKKKKKLLLKEIVTIAEEVKEEEVVVEEPVTVVEEVKEEKPTPAIEEPVV
AKSQTVVDPLSTKDDEDDDDDEDDYDDINEEDLKNIDAEIEKMQQEMGDELEDDDDEEEE
KEKETAPVVTKSEVVDPLSSTKEESEEEEEEETKVEVPVLEEEKEEEEKEEEEKEEEEKE
EE
Translated Amino Acid sequence (All Frames) 
Frame A:
qc*cr*rs*slyaksicssi*ii**iffifik*fr*rifn*fyhvni*rcn*ksyc*ihs
rtkrktttttrkrr---

---eekdqeeeeeekevvvernsyyc*rs*rrrscc*rtshcc*rs*rrktntsn*rtsc
r*itncr*stly*r**r**rr*rrl**yq*rrs*ky*crn*kdatrng**t*rr**rrrr
krkrnssscy*irsc*stliy*rri*rrrrrgn*s*stsfrrrkrrrrkrrrrkrrrrkr
rr

Frame B:
NVDVAKEVKVCMQKVFVQVSESFDEYSSSSSNDSDEEYSTDSIMSTFKDVIKRVTVEYIQ
EQKEKQQQQQEKE---

---KKKTKKKKKKKKKLLLKEIVTIAEEVKEEEVVVEEPVTVVEEVKEEKPTPAIEEPVV
AKSQTVVDPLSTKDDEDDDDDEDDYDDINEEDLKNIDAEIEKMQQEMGDELEDDDDEEEE
KEKETAPVVTKSEVVDPLSSTKEESEEEEEEETKVEVPVLEEEKEEEEKEEEEKEEEEKE
EE

Frame C:
mlmslkklkfvckkylfkylnhlmnilhlhqmiqmkniqlilscqhlkm*lkelllntfk
nkkknnnnnkkkk---

---rkrprrrrrrkrscc*kk*llllkklkkkklllknqslllkklkkknqhqqlknqls
lnhklslihsllkmmkmmttmktimmismkkilkilmpklkrcnkkwvmnlktmmtkkkk
kkkkqlqlllnqkllihshllkknlkkkkkrklklkyqf*kkkkkkkkkkkkkkkkkkkk
k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLI202 (SLI202Q) /CSM/SL/SLI2-A/SLI202Q.Seq.d/                        500   e-140
SFJ117 (SFJ117Q) /CSM/SF/SFJ1-A/SFJ117Q.Seq.d/                        361   1e-98
VHH394 (VHH394Q) /CSM/VH/VHH3-D/VHH394Q.Seq.d/                        151   2e-35
SLC359 (SLC359Q) /CSM/SL/SLC3-C/SLC359Q.Seq.d/                        151   2e-35
CHR294 (CHR294Q) /CSM/CH/CHR2-D/CHR294Q.Seq.d/                        151   2e-35
VHQ364 (VHQ364Q) /CSM/VH/VHQ3-C/VHQ364Q.Seq.d/                         56   8e-07
VHM292 (VHM292Q) /CSM/VH/VHM2-D/VHM292Q.Seq.d/                         56   8e-07
VHG887 (VHG887Q) /CSM/VH/VHG8-D/VHG887Q.Seq.d/                         56   8e-07
VFH405 (VFH405Q) /CSM/VF/VFH4-A/VFH405Q.Seq.d/                         56   8e-07
VHP226 (VHP226Q) /CSM/VH/VHP2-B/VHP226Q.Seq.d/                         52   1e-05
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU062187) Dictyostelium discoideum slug cDNA, clone SLI202.      353   6e-93  1
(AU053236) Dictyostelium discoideum slug cDNA, clone SLI202.      143   2e-85  3
(BJ401657) Dictyostelium discoideum cDNA clone:dds19a05, 3' ...   143   1e-75  3
(BJ386019) Dictyostelium discoideum cDNA clone:ddc56k24, 3' ...   151   3e-71  2
(BJ422434) Dictyostelium discoideum cDNA clone:ddv45l23, 5' ...   151   3e-71  2
(AU060954) Dictyostelium discoideum slug cDNA, clone SLC359.      151   3e-71  2
(BH204396) Sm1-48O23.TF Sm1 Schistosoma mansoni genomic clon...    48   0.50   1
(AC007016) Homo sapiens chromosome 4 clone C0478G20 map 4p16...    46   2.0    1
(FK254362) USDA-FP_190325 Asian citrus psyllid midgut (Hemip...    46   2.0    1
(EV146019) 0211953 Brassica napus Very early anther Brassica...    46   2.0    1
dna update 2009. 6.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54G21) RecName: Full=FK506-binding protein 5;          EC=5.2....    88   3e-16
AP009484_1305(AP009484|pid:none) Macrococcus caseolyticus JCSC54...    33   9.7
protein update 2009. 6. 5
PSORT 

 psg: 0.80  gvh: 0.51  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.24  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SLI202 is nuc
5' end seq. ID SLI202F
5' end seq. 
>SLI202F.Seq
CAATGTTGATGTCGCTAAAGAAGTTAAAGTTTGTATGCAAAAAGTATTTGTTCAAGTATC
TGAATCATTTGATGAATATTCTTCATCTTCATCAAATGATTCAGATGAAGAATATTCAAC
TGATTCTATCATGTCAACATTTAAAGATGTAATTAAAAGAGTTACTGTTGAATACATTCA
AGAACAAAAAGAAAAACAACAACAACAACAAGAAAAAGAAGA----------
Length of 5' end seq. 222
3' end seq. ID SLI202Z
3' end seq. 
>SLI202Z.Seq
----------GAAGAAAAAGACCAAGAAGAAGAAGAAGAAGAAAAAGAAGTTGTTGTTGA
AAGAAATAGTTACTATTGCTGAAGAAGTTAAAGAAGAAGAAGTTGTTGTTGAAGAACCAG
TCACTGTTGTTGAAGAAGTTAAAGAAGAAAAACCAACACCAGCAATTGAAGAACCAGTTG
TCGCTAAATCACAAACTGTCGTTGATCCACTCTCTACTAAAGATGATGAAGATGATGACG
ACGATGAAGACGATTATGATGATATCAATGAAGAAGATCTTAAAAATATTGATGCCGAAA
TTGAAAAGATGCAACAAGAAATGGGTGATGAACTTGAAGACGATGATGACGAAGAAGAAG
AAAAAGAAAAAGAAACAGCTCCAGTTGTTACTAAATCAGAAGTTGTTGATCCACTCTCAT
CTACTAAAGAAGAATCTGAAGAAGAAGAAGAAGAGGAAACTAAAGTTGAAGTACCAGTTT
TAGAAGAAGAAAAAGAAGAAGAAGAAAAAGAAGAAGAAGAAAAAGAAGAAGAAGAAAAAG
AAGAAGAA
Length of 3' end seq. 538
Connected seq. ID SLI202P
Connected seq. 
>SLI202P.Seq
CAATGTTGATGTCGCTAAAGAAGTTAAAGTTTGTATGCAAAAAGTATTTGTTCAAGTATC
TGAATCATTTGATGAATATTCTTCATCTTCATCAAATGATTCAGATGAAGAATATTCAAC
TGATTCTATCATGTCAACATTTAAAGATGTAATTAAAAGAGTTACTGTTGAATACATTCA
AGAACAAAAAGAAAAACAACAACAACAACAAGAAAAAGAAGA----------GAAGAAAA
AGACCAAGAAGAAGAAGAAGAAGAAAAAGAAGTTGTTGTTGAAAGAAATAGTTACTATTG
CTGAAGAAGTTAAAGAAGAAGAAGTTGTTGTTGAAGAACCAGTCACTGTTGTTGAAGAAG
TTAAAGAAGAAAAACCAACACCAGCAATTGAAGAACCAGTTGTCGCTAAATCACAAACTG
TCGTTGATCCACTCTCTACTAAAGATGATGAAGATGATGACGACGATGAAGACGATTATG
ATGATATCAATGAAGAAGATCTTAAAAATATTGATGCCGAAATTGAAAAGATGCAACAAG
AAATGGGTGATGAACTTGAAGACGATGATGACGAAGAAGAAGAAAAAGAAAAAGAAACAG
CTCCAGTTGTTACTAAATCAGAAGTTGTTGATCCACTCTCATCTACTAAAGAAGAATCTG
AAGAAGAAGAAGAAGAGGAAACTAAAGTTGAAGTACCAGTTTTAGAAGAAGAAAAAGAAG
AAGAAGAAAAAGAAGAAGAAGAAAAAGAAGAAGAAGAAAAAGAAGAAGAA
Length of connected seq. 760
Full length Seq ID -
Full length Seq. -
Length of full length seq. -