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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLI168
Library SL
(Link to library)
Clone ID SLI168
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11611-1
Original site URL
Representative seq. ID SLI168Z
(Link to Original site)
Representative DNA sequence 
>SLI168 (SLI168Q) /CSM/SL/SLI1-C/SLI168Q.Seq.d/
XXXXXXXXXXGTTTTACCATAACGGTCTTGTGGTGGTGGATAACCAAAAGTATCATATTT
AGCATAAGGATTAGTTGTTGGAGTAACCATTGGATAAGGGTGATACATTTCTTTTTTATG
GTCAAACTTACCGCCTGGACCCCCAGTCATATTTTGACCAGTGTAACCTGAACGTCTTGG
ATCAACGATTGGAATTTGTGGAGTATAATAGTAGTCTTGTGGTACGGAACCTGGAAAGTA
GTAATGATAATCATATGGTGGAGCGGCCAATGGTGTATTGGCTGCGAAATAACCATCCAT
CATCTTTCTTTGTTTTGGAAGACCCCATGAAATTGTTAACTTTTGACCCATGAAATCAAA
GTCATGATTGTGATCCATGATGATCTTTGCGTCCGATGTTGAGTTACAATAGATGAAAGC
ATGACCTAGTGGTGTCTTTTTTTGTGAATCCAATGGTACAACAATCTTTTCAATAAGTTC
TGGTCCTAATTGTTTTCTTAATATTAATTCTGTTTGAGGACAAAAAAAAAAAACAAAAAA
AAAAAC
sequence update 1998. 8.21
Translated Amino Acid sequence 
---fyhnglvvvdnqkyhi*hkd*lle*PLDKGDTFLFYGQTYRLDPQSYFDQCNLNVLD
QRLEFVEYNSSLVVRNLESSNDNHMVERPMVYWLRNNHPSSFFVLEDPMKLLTFDP*nqs
hdcdp**slrpmlsynr*khdlvvsffvnpmvqqsfq*vlvlivflililfedkkkkqkk
k
Translated Amino Acid sequence (All Frames) 
Frame A:
---fyhnglvvvdnqkyhi*hkd*lle*PLDKGDTFLFYGQTYRLDPQSYFDQCNLNVLD
QRLEFVEYNSSLVVRNLESSNDNHMVERPMVYWLRNNHPSSFFVLEDPMKLLTFDP*nqs
hdcdp**slrpmlsynr*khdlvvsffvnpmvqqsfq*vlvlivflililfedkkkkqkk
k


Frame B:
---ftitvlwwwitksiifsiriscwsnhwirvihfffmvkltawtpshiltsvt*tswi
ndwnlwsiivvlwygtwkvvmiiiwwsgqwcigceitihhlslfwktp*nc*lltheikv
mivihddlcvrc*vtidesmt*wclfl*iqwynnlfnkfws*lfs*y*fclrtkkknkkk
n


Frame C:
---lp*rscggg*pkvsyla*glvvgvtig*g*yisflwsnlppgppvif*pv*perlgs
tigicgv***scgtepgk****syggaangvlaak*psiiflcfgrpheivnf*pmksks
*l*smmifasdvelq*mka*psgvffcesngttifsissgpncflninsv*gqkkktkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLI168 (SLI168Q) /CSM/SL/SLI1-C/SLI168Q.Seq.d/                        971   0.0
VFJ838 (VFJ838Q) /CSM/VF/VFJ8-B/VFJ838Q.Seq.d/                        936   0.0
VFE796 (VFE796Q) /CSM/VF/VFE7-D/VFE796Q.Seq.d/                        936   0.0
SLE293 (SLE293Q) /CSM/SL/SLE2-D/SLE293Q.Seq.d/                        936   0.0
SFJ240 (SFJ240Q) /CSM/SF/SFJ2-B/SFJ240Q.Seq.d/                        936   0.0
SFG361 (SFG361Q) /CSM/SF/SFG3-C/SFG361Q.Seq.d/                        936   0.0
CFC306 (CFC306Q) /CSM/CF/CFC3-A/CFC306Q.Seq.d/                        936   0.0
VFJ689 (VFJ689Q) /CSM/VF/VFJ6-D/VFJ689Q.Seq.d/                        930   0.0
SFC528 (SFC528Q) /CSM/SF/SFC5-B/SFC528Q.Seq.d/                        928   0.0
SFF277 (SFF277Q) /CSM/SF/SFF2-D/SFF277Q.Seq.d/                        908   0.0
own update 2001.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU053221) Dictyostelium discoideum slug cDNA, clone SLI168.      842   0.0    2
(BJ373872) Dictyostelium discoideum cDNA clone:ddc5l01, 3' e...   842   0.0    2
(BJ432978) Dictyostelium discoideum cDNA clone:ddv20l10, 3' ...   842   0.0    2
(BJ428165) Dictyostelium discoideum cDNA clone:ddv10p23, 3' ...   842   0.0    2
(BJ401805) Dictyostelium discoideum cDNA clone:dds19o10, 3' ...   842   0.0    2
(AU034764) Dictyostelium discoideum slug cDNA, clone SLE293.      842   0.0    2
(BJ400524) Dictyostelium discoideum cDNA clone:dds13j15, 3' ...   842   0.0    2
(BJ433085) Dictyostelium discoideum cDNA clone:ddv20a24, 3' ...   837   0.0    2
(BJ399515) Dictyostelium discoideum cDNA clone:dds6g07, 3' e...   835   0.0    2
(BJ398291) Dictyostelium discoideum cDNA clone:dds11i20, 3' ...   440   0.0    3
dna update 2009. 6.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR940347_1154(CR940347|pid:none) Theileria annulata strain Ankar...    38   0.19
CU458896_3753(CU458896|pid:none) Mycobacterium abscessus chromos...    37   0.25
EU492544_1(EU492544|pid:none) Penaeus monodon transformer-2 prot...    37   0.33
EU492545_1(EU492545|pid:none) Penaeus monodon variant transforme...    37   0.33
BC095368_1(BC095368|pid:none) Danio rerio zgc:110682, mRNA (cDNA...    37   0.43
AY598939_1(AY598939|pid:none) Aspergillus fumigatus annexin ANXC...    37   0.43
AE013599_3263(AE013599|pid:none) Drosophila melanogaster chromos...    35   0.96
BT076979_1(BT076979|pid:none) Caligus rogercresseyi clone crog-e...    35   1.3
CU633872_297(CU633872|pid:none) Podospora anserina genomic DNA c...    35   1.6
BT043265_1(BT043265|pid:none) Zea mays full-length cDNA clone ZM...    35   1.6
protein update 2009. 6. 5
PSORT 

 psg: 0.75  gvh: 0.26  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SLI168 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLI168Z
3' end seq. 
>SLI168Z.Seq
----------GTTTTACCATAACGGTCTTGTGGTGGTGGATAACCAAAAGTATCATATTT
AGCATAAGGATTAGTTGTTGGAGTAACCATTGGATAAGGGTGATACATTTCTTTTTTATG
GTCAAACTTACCGCCTGGACCCCCAGTCATATTTTGACCAGTGTAACCTGAACGTCTTGG
ATCAACGATTGGAATTTGTGGAGTATAATAGTAGTCTTGTGGTACGGAACCTGGAAAGTA
GTAATGATAATCATATGGTGGAGCGGCCAATGGTGTATTGGCTGCGAAATAACCATCCAT
CATCTTTCTTTGTTTTGGAAGACCCCATGAAATTGTTAACTTTTGACCCATGAAATCAAA
GTCATGATTGTGATCCATGATGATCTTTGCGTCCGATGTTGAGTTACAATAGATGAAAGC
ATGACCTAGTGGTGTCTTTTTTTGTGAATCCAATGGTACAACAATCTTTTCAATAAGTTC
TGGTCCTAATTGTTTTCTTAATATTAATTCTGTTTGAGGACAAAAAAAAAAAACAAAAAA
AAAAAC
Length of 3' end seq. 536
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -