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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLI137
Library SL
(Link to library)
Clone ID SLI137
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U09236-1
Original site URL
Representative seq. ID SLI137P
(Link to Original site)
Representative DNA sequence 
>SLI137 (SLI137Q) /CSM/SL/SLI1-B/SLI137Q.Seq.d/
CAATTGGTGTCACTTTCTTTGAAATGGTCACTGGTAATGAAATGCCAACCAATGGTCCAT
TATGGGAACAGTTAAGAAGTGATAAAGCTATTGATTTCCTTGAACCTGGTAAATACTCTG
ATTCACTTTATCAAGTAATTCTAGATATGATGAAATCAAATATAACTGAAAGAATATCTT
TAGATCAAATTTTATTAAATGAAAATATTCAATTAGTTCAACAAAAACGTTTAAATCAAT
TTCAAAATATTGATAATATTGAAXXXXXXXXXXCGGTGAATTTAGTAATAGTAGTAAAAA
GAAATTAGGTAAAAGAGGGTTACCTTTACTCGATGTTGTTAATGGTGGAGGTAATAGTGG
TTCAAAGGTTTGCGCAATTAAAAGAAGTTTCGATTCACATCCTCAAGAGAGTGATAAAAT
GTCACCAAGAAATCTTTTGAGTCTTTTCCAAGAAACAAATTAAAAAAAAAAAAAAAATAA
TATTATTAAAAGTGATATTAAAATACTGA
sequence update 1999. 2.23
Translated Amino Acid sequence 
IGVTFFEMVTGNEMPTNGPLWEQLRSDKAIDFLEPGKYSDSLYQVILDMMKSNITERISL
DQILLNENIQLVQQKRLNQFQNIDNIE---

---GEFSNSSKKKLGKRGLPLLDVVNGGGNSGSKVCAIKRSFDSHPQESDKMSPRNLLSL
FQETN*kkkknniiksdikil
Translated Amino Acid sequence (All Frames) 
Frame A:
qlvslslkwslvmkcqpmvhygns*evikllislnlvntlihfik*f*i**nqi*lkeyl
*ikfy*mkifn*fnknv*infkiliil---

---r*i*****keir*krvtftrcc*wwr**wfkglrn*kkfrftssre**nvtkksfes
fprnklkkkkk*yy*k*y*nt

Frame B:
nwchfl*nghw**nanqwsimgtvkk**sy*fp*tw*il*ftlssnsrydeikyn*knif
rsnfik*kysisstktfksisky**y*---

---GEFSNSSKKKLGKRGLPLLDVVNGGGNSGSKVCAIKRSFDSHPQESDKMSPRNLLSL
FQETN*kkkknniiksdikil

Frame C:
IGVTFFEMVTGNEMPTNGPLWEQLRSDKAIDFLEPGKYSDSLYQVILDMMKSNITERISL
DQILLNENIQLVQQKRLNQFQNIDNIE---

---vnlvivvkrn*vkegylysmllmvevivvqrfaqlkevsihilkrvikchqeif*vf
skkqikkkkkiillkvilky*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLI137 (SLI137Q) /CSM/SL/SLI1-B/SLI137Q.Seq.d/                        854   0.0
SHL562 (SHL562Q) /CSM/SH/SHL5-C/SHL562Q.Seq.d/                         44   0.002
SHK878 (SHK878Q) /CSM/SH/SHK8-D/SHK878Q.Seq.d/                         44   0.002
CHN304 (CHN304Q) /CSM/CH/CHN3-A/CHN304Q.Seq.d/                         44   0.002
CHM239 (CHM239Q) /CSM/CH/CHM2-B/CHM239Q.Seq.d/                         44   0.002
CHL120 (CHL120Q) /CSM/CH/CHL1-A/CHL120Q.Seq.d/                         44   0.002
CHI163 (CHI163Q) /CSM/CH/CHI1-C/CHI163Q.Seq.d/                         44   0.002
CHH374 (CHH374Q) /CSM/CH/CHH3-D/CHH374Q.Seq.d/                         44   0.002
CHD790 (CHD790Q) /CSM/CH/CHD7-D/CHD790Q.Seq.d/                         44   0.002
VSJ504 (VSJ504Q) /CSM/VS/VSJ5-A/VSJ504Q.Seq.d/                         38   0.13
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU062173) Dictyostelium discoideum slug cDNA, clone SLI137.      521   e-144  1
(AU053200) Dictyostelium discoideum slug cDNA, clone SLI137.      373   e-112  2
(AY700145) Polysphondylium pallidum mitochondrion DNA, compl...    44   0.009  2
(AP009698) Lotus japonicus genomic DNA, clone: LjT02O17, TM1...    50   0.083  1
(CZ956643) 273730 Tomato EcoRI BAC Library Solanum lycopersi...    40   0.22   3
(EJ335020) 1092963471536 Global-Ocean-Sampling_GS-28-01-01-1...    48   0.33   1
(EB283457) CNSN01-F-003125-501 Normalized CNS library (juven...    48   0.33   1
(AV091741) Mus musculus adult male tongue cDNA, partial sequ...    48   0.33   1
(AF268063) Candidatus Carsonella ruddii natural-host Trioza ...    32   0.46   4
(EJ304046) 1095390062341 Global-Ocean-Sampling_GS-27-01-01-1...    42   0.60   2
dna update 2009. 6.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF215861_1(AF215861|pid:none) Drosophila melanogaster Myt1 kinas...    47   3e-04
AM494957_94(AM494957|pid:none) Leishmania braziliensis chromosom...    41   0.014
AB060280_1(AB060280|pid:none) Asterina pectinifera Myt1 mRNA, co...    39   0.054
AM502252_83(AM502252|pid:none) Leishmania infantum chromosome 34.      38   0.12
CT005271_98(CT005271|pid:none) Leishmania major strain Friedlin,...    38   0.12
AP007159_224(AP007159|pid:none) Aspergillus oryzae RIB40 genomic...    35   1.0
FM200079_1(FM200079|pid:none) Histomonas meleagridis partial mRN...    34   1.7
U17223_1(U17223|pid:none) Drosophila melanogaster Wee1 kinase (w...    34   1.7
(P54350) RecName: Full=Wee1-like protein kinase;          Short=...    34   1.7
AC104488_25(AC104488|pid:none) Trypanosoma brucei chromosome 5 c...    33   3.9
protein update 2009. 6. 5
PSORT 

 psg: 0.75  gvh: 0.24  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SLI137 is nuc
5' end seq. ID SLI137F
5' end seq. 
>SLI137F.Seq
CAATTGGTGTCACTTTCTTTGAAATGGTCACTGGTAATGAAATGCCAACCAATGGTCCAT
TATGGGAACAGTTAAGAAGTGATAAAGCTATTGATTTCCTTGAACCTGGTAAATACTCTG
ATTCACTTTATCAAGTAATTCTAGATATGATGAAATCAAATATAACTGAAAGAATATCTT
TAGATCAAATTTTATTAAATGAAAATATTCAATTAGTTCAACAAAAACGTTTAAATCAAT
TTCAAAATATTGATAATATTGAA----------
Length of 5' end seq. 263
3' end seq. ID SLI137Z
3' end seq. 
>SLI137Z.Seq
----------CGGTGAATTTAGTAATAGTAGTAAAAAGAAATTAGGTAAAAGAGGGTTAC
CTTTACTCGATGTTGTTAATGGTGGAGGTAATAGTGGTTCAAAGGTTTGCGCAATTAAAA
GAAGTTTCGATTCACATCCTCAAGAGAGTGATAAAATGTCACCAAGAAATCTTTTGAGTC
TTTTCCAAGAAACAAATTAAAAAAAAAAAAAAAATAATATTATTAAAAGTGATATTAAAA
TACTGA
Length of 3' end seq. 236
Connected seq. ID SLI137P
Connected seq. 
>SLI137P.Seq
CAATTGGTGTCACTTTCTTTGAAATGGTCACTGGTAATGAAATGCCAACCAATGGTCCAT
TATGGGAACAGTTAAGAAGTGATAAAGCTATTGATTTCCTTGAACCTGGTAAATACTCTG
ATTCACTTTATCAAGTAATTCTAGATATGATGAAATCAAATATAACTGAAAGAATATCTT
TAGATCAAATTTTATTAAATGAAAATATTCAATTAGTTCAACAAAAACGTTTAAATCAAT
TTCAAAATATTGATAATATTGAA----------CGGTGAATTTAGTAATAGTAGTAAAAA
GAAATTAGGTAAAAGAGGGTTACCTTTACTCGATGTTGTTAATGGTGGAGGTAATAGTGG
TTCAAAGGTTTGCGCAATTAAAAGAAGTTTCGATTCACATCCTCAAGAGAGTGATAAAAT
GTCACCAAGAAATCTTTTGAGTCTTTTCCAAGAAACAAATTAAAAAAAAAAAAAAAATAA
TATTATTAAAAGTGATATTAAAATACTGA
Length of connected seq. 499
Full length Seq ID -
Full length Seq. -
Length of full length seq. -