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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLI124
Library SL
(Link to library)
Clone ID SLI124
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15429-1|Contig-U15952-1
Original site URL
Representative seq. ID SLI124P
(Link to Original site)
Representative DNA sequence 
>SLI124 (SLI124Q) /CSM/SL/SLI1-A/SLI124Q.Seq.d/
GCGATGACGAATATGATTATTATGATTTTAAGAATAACGAAAGTGGTGTTTTATTATTAG
TAATTAGCAGTAACCAATTGATTGAAGTAGATTATAATGAAGAGGAATTACAAATTTTCG
ATAGACATTTCTATTTAACCGATTCAGTTCAAAAGATTAATTCCGATAGTAAATTATTAG
GTTCAGTTATAAAATGTCAAAAAACTTATTTCGTAGTACCATTTTCAACTATAAACACTG
GTATAATCACTCAAGGTGATTTAACTTTAGTTCAAAAAGTTTATGATCCATCAACTTTAG
TTGTTGGTAGTAAAGTTTTTGATTCAAATAAAATTGCTGCTGGXXXXXXXXXXAACAAAA
GTTGACGATTTCGACGATTCTGATAGTGAAGNTGAAGAAGATGATGATGAATATTATGAT
GATGATGATGATGATAGATCGTCTTTTAGCGAATATTGTGAATCNTCAAATTCAAAAGAA
CAAGNGGGTACAAGTGAAACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
sequence update 1999. 2.23
Translated Amino Acid sequence 
DDEYDYYDFKNNESGVLLLVISSNQLIEVDYNEEELQIFDRHFYLTDSVQKINSDSKLLG
SVIKCQKTYFVVPFSTINTGIITQGDLTLVQKVYDPSTLVVGSKVFDSNKIAA---

---TKVDDFDDSDSEXEEDDDEYYDDDDDDRSSFSEYCESSNSKEQXGTSETEKKKKKKK
KKKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
amtnmiimilritkvvfyy**lavtn*lk*iimkrnykfsidisi*piqfkrlipivny*
vql*nvkklis*yhfql*tlv*slkvi*l*fkkfmihql*llvvkfliqiklll---

---nks*rfrrf***x*rr***il*******ivf*ril*ixkfkrtxgyk*n*kkkkkkk
kkkkkkk

Frame B:
r*ri*ll*f*e*rkwcfiisn*q*pid*srl**rgitnfr*tflfnrfsskd*fr**iir
fsykmsknlfrstifnykhwynhsr*fnfssksl*sinfscw**sf*fk*nccw---

---TKVDDFDDSDSEXEEDDDEYYDDDDDDRSSFSEYCESSNSKEQXGTSETEKKKKKKK
KKKKKK

Frame C:
DDEYDYYDFKNNESGVLLLVISSNQLIEVDYNEEELQIFDRHFYLTDSVQKINSDSKLLG
SVIKCQKTYFVVPFSTINTGIITQGDLTLVQKVYDPSTLVVGSKVFDSNKIAA---

---qkltistilivkxkkmmmnimmmmmmidrllanivnxqiqknkxvqvklkkkkkkkk
kkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLI124 (SLI124Q) /CSM/SL/SLI1-A/SLI124Q.Seq.d/                        726   0.0
FC-AD12 (FC-AD12Q) /CSM/FC/FC-AD/FC-AD12Q.Seq.d/                      609   e-173
SLH855 (SLH855Q) /CSM/SL/SLH8-C/SLH855Q.Seq.d/                         42   0.009
SSM749 (SSM749Q) /CSM/SS/SSM7-C/SSM749Q.Seq.d/                         38   0.14
SSD769 (SSD769Q) /CSM/SS/SSD7-C/SSD769Q.Seq.d/                         38   0.14
SHL705 (SHL705Q) /CSM/SH/SHL7-A/SHL705Q.Seq.d/                         38   0.14
SHK636 (SHK636Q) /CSM/SH/SHK6-B/SHK636Q.Seq.d/                         38   0.14
SHK134 (SHK134Q) /CSM/SH/SHK1-B/SHK134Q.Seq.d/                         38   0.14
SHI406 (SHI406Q) /CSM/SH/SHI4-A/SHI406Q.Seq.d/                         38   0.14
SHG568 (SHG568Q) /CSM/SH/SHG5-C/SHG568Q.Seq.d/                         38   0.14
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU062169) Dictyostelium discoideum slug cDNA, clone SLI124.      676   0.0    1
(C23734) Dictyostelium discoideum gamete cDNA, clone FC-AD12.     571   e-168  2
(AU053195) Dictyostelium discoideum slug cDNA, clone SLI124.      121   6e-43  2
(AC168558) Strongylocentrotus purpuratus clone R3-3091F22, W...    52   0.023  1
(AC114652) Mus musculus chromosome 18, clone RP24-156O17, co...    48   0.35   1
(AC165232) Mus musculus chromosome 7 clone RP23-110G24 map 7...    48   0.35   1
(DU862057) 70626 Tomato HindIII BAC Library Solanum lycopers...    48   0.35   1
(FE211390) L018C10 Antarctic fish Dissostichus mawsoni adult...    48   0.35   1
(AC067869) Homo sapiens chromosome 2 clone RP11-748A23 map 2...    46   1.4    1
(AC180982) Strongylocentrotus purpuratus clone R3-3058I1, WO...    46   1.4    1
dna update 2009. 6.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001217_433(CP001217|pid:none) Helicobacter pylori P12, complet...    35   0.95
AE001439_412(AE001439|pid:none) Helicobacter pylori J99, complet...    34   2.1
CR936503_701(CR936503|pid:none) Lactobacillus sakei strain 23K c...    33   4.7
T30844(T30844) serine-repeat antigen 5 precursor - Plasmodium vi...    32   8.0
protein update 2009. 6. 5
PSORT 

 psg: 0.75  gvh: 0.47  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.10  mip: 0.00
 nuc: 0.40  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 16.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  4.0 %: peroxisomal

>> prediction for SLI124 is nuc
5' end seq. ID SLI124F
5' end seq. 
>SLI124F.Seq
GCGATGACGAATATGATTATTATGATTTTAAGAATAACGAAAGTGGTGTTTTATTATTAG
TAATTAGCAGTAACCAATTGATTGAAGTAGATTATAATGAAGAGGAATTACAAATTTTCG
ATAGACATTTCTATTTAACCGATTCAGTTCAAAAGATTAATTCCGATAGTAAATTATTAG
GTTCAGTTATAAAATGTCAAAAAACTTATTTCGTAGTACCATTTTCAACTATAAACACTG
GTATAATCACTCAAGGTGATTTAACTTTAGTTCAAAAAGTTTATGATCCATCAACTTTAG
TTGTTGGTAGTAAAGTTTTTGATTCAAATAAAATTGCTGCTGG----------
Length of 5' end seq. 343
3' end seq. ID SLI124Z
3' end seq. 
>SLI124Z.Seq
----------AACAAAAGTTGACGATTTCGACGATTCTGATAGTGAAGNTGAAGAAGATG
ATGATGAATATTATGATGATGATGATGATGATAGATCGTCTTTTAGCGAATATTGTGAAT
CNTCAAATTCAAAAGAACAAGNGGGTACAAGTGAAACTGAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 192
Connected seq. ID SLI124P
Connected seq. 
>SLI124P.Seq
GCGATGACGAATATGATTATTATGATTTTAAGAATAACGAAAGTGGTGTTTTATTATTAG
TAATTAGCAGTAACCAATTGATTGAAGTAGATTATAATGAAGAGGAATTACAAATTTTCG
ATAGACATTTCTATTTAACCGATTCAGTTCAAAAGATTAATTCCGATAGTAAATTATTAG
GTTCAGTTATAAAATGTCAAAAAACTTATTTCGTAGTACCATTTTCAACTATAAACACTG
GTATAATCACTCAAGGTGATTTAACTTTAGTTCAAAAAGTTTATGATCCATCAACTTTAG
TTGTTGGTAGTAAAGTTTTTGATTCAAATAAAATTGCTGCTGG----------AACAAAA
GTTGACGATTTCGACGATTCTGATAGTGAAGNTGAAGAAGATGATGATGAATATTATGAT
GATGATGATGATGATAGATCGTCTTTTAGCGAATATTGTGAATCNTCAAATTCAAAAGAA
CAAGNGGGTACAAGTGAAACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
Length of connected seq. 535
Full length Seq ID -
Full length Seq. -
Length of full length seq. -