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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH872
Library SL
(Link to library)
Clone ID SLH872
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16397-1
Original site URL
Representative seq. ID SLH872Z
(Link to Original site)
Representative DNA sequence 
>SLH872 (SLH872Q) /CSM/SL/SLH8-C/SLH872Q.Seq.d/
XXXXXXXXXXGGTATTGACACTGAAAGTAGTTATCCATATACTGCTGAAACTGGTTCAAC
ATGTTTATTCAATAAATCTGATATTGGTGCAACCATTAAAGGTTATGTTAACATTACTGC
CGGTTCAGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGTTGCAATTGA
TGCTTCCCATAATAGTTTCCAACTCTATACATCTGGTATCTATTATGAGCCAAAATGTTC
TCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGA
TGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAATGAAGATAATAA
AGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGAT
CGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGA
TAGAAAGAATAATTGTGGTATTGCATCAGTTAGCTCTTATCCACTTGCCTAGATTTATGG
TTCCAAAATGAATAGGAGAATGTTTGGATCTATCTAGTAACCTGAAATGTTTTTCTATTA
AAAAAATAAAAATAAAAATAATAATTTCTAATTGTATAAAATAAAAA
sequence update 1998. 7.15
Translated Amino Acid sequence 
---IDTESSYPYTAETGSTCLFNKSDIGATIKGYVNITAGSEISLENGAQHGPVSVAIDA
SHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKV
ESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRKNNCGIASVSSYPLA*iygs
kmnrrmfgsi**pemffy*knknknnnf*lykik
Translated Amino Acid sequence (All Frames) 
Frame A:
---vltlkvvihillklvqhvysinlilvqplkvmltllpvqrfh*rmvlnmvqyllqlm
lpiivsnsihlvsimsqnvlqlnwimvf*llvmvfkvkmmkvqy*tenkpllstrmkiik
lnplmihlivldqrqiiigslkihgvphgv*kvtf*cqrieriivvlhqlalihlprfmv
pk*igecldlssnlkcfsikkikikiiisncik*k


Frame B:
---y*h*k*lsiyc*nwfnmfiq*i*ywcnh*rlc*hycrfrdfirewcstwssiccn*c
fp**fptlyiwyll*akmfsn*igswcfscwlwcsr*r**rssikqktnhcypqe*r**s
*il**fi**c*tkgk*lldr*kfmgylmgykrlhfnvkg*ke*lwycis*llstcldlwf
qne*envwiylvt*nvfllkk*k*k**fliv*nk


Frame C:
---IDTESSYPYTAETGSTCLFNKSDIGATIKGYVNITAGSEISLENGAQHGPVSVAIDA
SHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKV
ESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRKNNCGIASVSSYPLA*iygs
kmnrrmfgsi**pemffy*knknknnnf*lykik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL687 (SSL687Q) /CSM/SS/SSL6-D/SSL687Q.Seq.d/                       1168   0.0
SSK657 (SSK657Q) /CSM/SS/SSK6-C/SSK657Q.Seq.d/                       1168   0.0
SSK121 (SSK121Q) /CSM/SS/SSK1-A/SSK121Q.Seq.d/                       1168   0.0
SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/                       1168   0.0
SSG787 (SSG787Q) /CSM/SS/SSG7-D/SSG787Q.Seq.d/                       1168   0.0
SSG365 (SSG365Q) /CSM/SS/SSG3-C/SSG365Q.Seq.d/                       1168   0.0
SSF462 (SSF462Q) /CSM/SS/SSF4-C/SSF462Q.Seq.d/                       1168   0.0
SSC639 (SSC639Q) /CSM/SS/SSC6-B/SSC639Q.Seq.d/                       1168   0.0
SSA431 (SSA431Q) /CSM/SS/SSA4-B/SSA431Q.Seq.d/                       1168   0.0
SLH872 (SLH872Q) /CSM/SL/SLH8-C/SLH872Q.Seq.d/                       1168   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(X03344) Dictyostelium discoideum mRNA for cysteine proteina...  1162   0.0    1
(AU052270) Dictyostelium discoideum slug cDNA, clone SLA477.     1162   0.0    1
(AU039933) Dictyostelium discoideum slug cDNA, clone SLG775.     1162   0.0    1
(AU039485) Dictyostelium discoideum slug cDNA, clone SLH872.     1162   0.0    1
(AU033994) Dictyostelium discoideum slug cDNA, clone SLB708.     1162   0.0    1
(C94406) Dictyostelium discoideum slug cDNA, clone SSK657.       1162   0.0    1
(C94067) Dictyostelium discoideum slug cDNA, clone SSG365.       1162   0.0    1
(C93761) Dictyostelium discoideum slug cDNA, clone SSL687.       1162   0.0    1
(C92839) Dictyostelium discoideum slug cDNA, clone SSF462.       1162   0.0    1
(C91974) Dictyostelium discoideum slug cDNA, clone SSC639.       1162   0.0    1
dna update 2009. 6.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   340   2e-92
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   180   4e-44
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   180   4e-44
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...   163   3e-39
AY554271_1(AY554271|pid:none) Heterodera glycines cathepsin L-li...   162   8e-39
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs...   161   1e-38
DQ000609_1(DQ000609|pid:none) Globodera pallida cathepsin L-like...   160   2e-38
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ...   160   2e-38
AY999065_1(AY999065|pid:none) Globodera pallida cathepsin L-like...   160   2e-38
BC074718_1(BC074718|pid:none) Xenopus tropicalis MGC69486 protei...   160   3e-38
protein update 2009. 6. 4
PSORT 

 psg: 0.75  gvh: 0.32  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SLH872 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLH872Z
3' end seq. 
>SLH872Z.Seq
----------GGTATTGACACTGAAAGTAGTTATCCATATACTGCTGAAACTGGTTCAAC
ATGTTTATTCAATAAATCTGATATTGGTGCAACCATTAAAGGTTATGTTAACATTACTGC
CGGTTCAGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGTTGCAATTGA
TGCTTCCCATAATAGTTTCCAACTCTATACATCTGGTATCTATTATGAGCCAAAATGTTC
TCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGA
TGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAATGAAGATAATAA
AGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGAT
CGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGA
TAGAAAGAATAATTGTGGTATTGCATCAGTTAGCTCTTATCCACTTGCCTAGATTTATGG
TTCCAAAATGAATAGGAGAATGTTTGGATCTATCTAGTAACCTGAAATGTTTTTCTATTA
AAAAAATAAAAATAAAAATAATAATTTCTAATTGTATAAAATAAAAA
Length of 3' end seq. 637
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -