SLH861
Library SL
(Link to library)
Clone ID SLH861
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14087-1
Original site URL
Representative seq. ID SLH861E
(Link to Original site)
Representative DNA sequence
>SLH861 (SLH861Q) /CSM/SL/SLH8-C/SLH861Q.Seq.d/
AAAGAAACTTTTGTTGATCTTATGGCATTTGTAATGGTTGACTATGTCCCTAATTTGGGT
CTTTTGCCAAGTGGTGATTATCCTAAACTAATCTCTTTGAAAAAACATTTTGAATCATCA
CCACAACTTAAAAAATATTTGGAATCAAGACCCCAATCTAATTTCTGGAATATTCCCCAA
TTTTTTATTAATTTTTAATTTTAATTTTTAAATAAAAAAAGAATAAAATAAAACTAAATA
GCATTCAATGATGATGATAATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAAACACAAAAAAAAAAA
sequence update 1998. 7.15
Translated Amino Acid sequence
KETFVDLMAFVMVDYVPNLGLLPSGDYPKLISLKKHFESSPQLKKYLESRPQSNFWNIPQ
FFINF*f*flnkkrik*n*iafndddnnkkkkkkkkkkkkkkkentkkk


Translated Amino Acid sequence (All Frames)
Frame A:
KETFVDLMAFVMVDYVPNLGLLPSGDYPKLISLKKHFESSPQLKKYLESRPQSNFWNIPQ
FFINF*f*flnkkrik*n*iafndddnnkkkkkkkkkkkkkkkentkkk


Frame B:
kklllilwhl*wltmsliwvfcqvviiln*sl*knilnhhhnlkniwnqdpnlisgifpn
fllifnfnf*ikke*nktk*hsmmmiiikkkkkkkkkkkkkkkktqkkk


Frame C:
rnfc*sygicng*lcp*fgsfakw*ls*tnlfektf*iittt*kifgiktpi*fleyspi
fy*flilifk*kknkiklnsiq******kkkkkkkkkkkkkkrkhkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLH861 (SLH861Q) /CSM/SL/SLH8-C/SLH861Q.Seq.d/ 353 1e-96
SSM162 (SSM162Q) /CSM/SS/SSM1-C/SSM162Q.Seq.d/ 301 3e-81
SSL157 (SSL157Q) /CSM/SS/SSL1-C/SSL157Q.Seq.d/ 301 3e-81
SSK769 (SSK769Q) /CSM/SS/SSK7-C/SSK769Q.Seq.d/ 301 3e-81
SSJ566 (SSJ566Q) /CSM/SS/SSJ5-C/SSJ566Q.Seq.d/ 301 3e-81
SSI234 (SSI234Q) /CSM/SS/SSI2-B/SSI234Q.Seq.d/ 301 3e-81
SSH606 (SSH606Q) /CSM/SS/SSH6-A/SSH606Q.Seq.d/ 301 3e-81
SSH407 (SSH407Q) /CSM/SS/SSH4-A/SSH407Q.Seq.d/ 301 3e-81
SSE684 (SSE684Q) /CSM/SS/SSE6-D/SSE684Q.Seq.d/ 301 3e-81
SSC810 (SSC810Q) /CSM/SS/SSC8-A/SSC810Q.Seq.d/ 301 3e-81

own update 2001. 8.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU039477) Dictyostelium discoideum slug cDNA, clone SLH861. 353 3e-93 1
(AU038935) Dictyostelium discoideum slug cDNA, clone SSM162. 301 8e-78 1
(AU038352) Dictyostelium discoideum slug cDNA, clone SSH606. 301 8e-78 1
(AU038200) Dictyostelium discoideum slug cDNA, clone SSH407. 301 8e-78 1
(C94522) Dictyostelium discoideum slug cDNA, clone SSL157. 301 8e-78 1
(C94308) Dictyostelium discoideum slug cDNA, clone SSK769. 301 8e-78 1
(C92558) Dictyostelium discoideum slug cDNA, clone SSE684. 301 8e-78 1
(C92073) Dictyostelium discoideum slug cDNA, clone SSC147. 301 8e-78 1
(C92017) Dictyostelium discoideum slug cDNA, clone SSC810. 301 8e-78 1
(C91011) Dictyostelium discoideum slug cDNA, clone SSJ566. 301 8e-78 1
dna update 2009. 6.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54QV7) RecName: Full=Putative glutathione S-transferase alpha-... 103 2e-21
(Q86AU1) RecName: Full=Putative glutathione S-transferase alpha-... 47 2e-04
(Q54VI4) RecName: Full=Putative glutathione S-transferase alpha-... 40 0.019
(Q556G3) RecName: Full=Putative glutathione S-transferase alpha-... 39 0.073
(Q55FF3) RecName: Full=Putative glutathione S-transferase alpha-... 36 0.36
FN357554_38(FN357554|pid:none) Schistosoma mansoni genome sequen... 35 0.62
(P15964) RecName: Full=Glutathione S-transferase class-mu 26 kDa... 35 0.62
T21903(T21903) hypothetical protein F37B1.8 - Caenorhabditis ele... 35 0.62
(P09792) RecName: Full=Glutathione S-transferase class-mu 28 kDa... 35 0.81
U13853_1(U13853|pid:none) pGEX-4T1 cloning vector, complete sequ... 34 1.4
protein update 2009. 7. 5
PSORT

psg: 0.75 gvh: 0.33 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SLH861 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLH861E
Full length Seq.
>SLH861E.Seq
AAAGAAACTTTTGTTGATCTTATGGCATTTGTAATGGTTGACTATGTCCCTAATTTGGGT
CTTTTGCCAAGTGGTGATTATCCTAAACTAATCTCTTTGAAAAAACATTTTGAATCATCA
CCACAACTTAAAAAATATTTGGAATCAAGACCCCAATCTAATTTCTGGAATATTCCCCAA
TTTTTTATTAATTTTTAATTTTAATTTTTAAATAAAAAAAGAATAAAATAAAACTAAATA
GCATTCAATGATGATGATAATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAGAAAACACAAAAAAAAAAA
Length of full length seq. 328