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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH810
Library SL
(Link to library)
Clone ID SLH810
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10238-1
Original site URL
Representative seq. ID SLH810E
(Link to Original site)
Representative DNA sequence 
>SLH810 (SLH810Q) /CSM/SL/SLH8-A/SLH810Q.Seq.d/
TTTAATTTAATTGTTACTTTCGCCACTTTTCTGATTGCAGAATTTGGCTTTTTTGGTTTT
GTTTCATAAACTCTCATACAGTATCCTTTTTTTTGAGGATATCCTGTAAGTAATGTTTTT
CTTTTTTTTTTTGGACCTCTGGCTTTTCTATCCGTTATTTGATTTATTGTAATCATTTAA
TAATTTTAATAATTTTATGTTTTGTAATAATATCGTTATTTGTAACATTTTTGTA
sequence update 1998. 7.15
Translated Amino Acid sequence 
*fncyfrhfsdcriwlfwfcfinshtvsfflrisck*CFSFFFWTSGFSIRYLIYCNHLI
ILIILCFVIISLFVTFL
Translated Amino Acid sequence (All Frames) 
Frame A:
fnlivtfatfliaefgffgfvs*tliqypff*gypvsnvflfffgplaflsvi*fivii*
*f**fyvl**yryl*hfc


Frame B:
li*lllsplf*lqnlaflvlfhklsysilffedil*vmfffffldlwlfyplfdll*sfn
nfnnfmfcnnivicnifv


Frame C:
*fncyfrhfsdcriwlfwfcfinshtvsfflrisck*CFSFFFWTSGFSIRYLIYCNHLI
ILIILCFVIISLFVTFL
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA761 (VSA761Q) /CSM/VS/VSA7-C/VSA761Q.Seq.d/                        204   4e-52
SLH810 (SLH810Q) /CSM/SL/SLH8-A/SLH810Q.Seq.d/                        204   4e-52
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/               204   4e-52
VSE155 (VSE155Q) /CSM/VS/VSE1-C/VSE155Q.Seq.d/                        196   1e-49
VSE467 (VSE467Q) /CSM/VS/VSE4-C/VSE467Q.Seq.d/                        176   9e-44
VSD533 (VSD533Q) /CSM/VS/VSD5-B/VSD533Q.Seq.d/                        163   1e-39
VSI111 (VSI111Q) /CSM/VS/VSI1-A/VSI111Q.Seq.d/                         40   0.014
SSE218 (SSE218Q) /CSM/SS/SSE2-A/SSE218Q.Seq.d/                         40   0.014
SSK665 (SSK665Q) /CSM/SS/SSK6-C/SSK665Q.Seq.d/                         38   0.056
SSH360 (SSH360Q) /CSM/SS/SSH3-C/SSH360Q.Seq.d/                         38   0.056
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AB000109) Dictyostelium discoideum mitochondrial DNA, compl...   170   8e-53  3
(D21196) Dictyostelium discoideum mitochondrial DNA.              170   8e-53  3
(AU261718) Dictyostelium discoideum vegetative cDNA clone:VS...   170   9e-53  3
(AU039448) Dictyostelium discoideum slug cDNA, clone SLH810.      170   9e-53  3
(AU263129) Dictyostelium discoideum vegetative cDNA clone:VS...   167   6e-44  2
(AU262910) Dictyostelium discoideum vegetative cDNA clone:VS...   155   2e-43  3
(DQ336395) Dictyostelium citrinum mitochondrion, complete ge...   111   2e-30  3
(AC149333) Phakopsora pachyrhizi clone JGIAFNA-25D11, comple...    48   0.14   1
(EJ478507) 1095403455113 Global-Ocean-Sampling_GS-28-01-01-1...    48   0.14   1
(EJ448683) 1093015386363 Global-Ocean-Sampling_GS-28-01-01-1...    48   0.14   1
dna update 2009. 6.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU275726_28(EU275726|pid:none) Polysphondylium pallidum strain P...    82   4e-15
AY700145_10(AY700145|pid:none) Polysphondylium pallidum mitochon...    82   4e-15
AF110138_22(AF110138|pid:none) Nephroselmis olivacea mitochondri...    63   4e-09
AF222718_34(AF222718|pid:none) Chrysodidymus synuroideus mitocho...    62   6e-09
(P46744) RecName: Full=Ribosomal protein S12, mitochondrial;  &T...    62   8e-09
CP001213_1127(CP001213|pid:none) Bifidobacterium animalis subsp....    62   8e-09
DQ336395_8(DQ336395|pid:none) Dictyostelium citrinum mitochondri...    61   1e-08
CP001229_1715(CP001229|pid:none) Sulfurihydrogenibium azorense A...    61   1e-08
CP000859_704(CP000859|pid:none) Desulfococcus oleovorans Hxd3, c...    61   1e-08
(A9H3R9) RecName: Full=30S ribosomal protein S12;  &AM889285_340...    61   1e-08
protein update 2009. 7. 5
PSORT 

 psg: 0.97  gvh: 0.67  alm: 17.64  top: 0.43  tms: -0.07  mit: 0.42  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 12.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: plasma membrane

>> prediction for SLH810 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLH810E
Full length Seq. 
>SLH810E.Seq
TTTAATTTAATTGTTACTTTCGCCACTTTTCTGATTGCAGAATTTGGCTTTTTTGGTTTT
GTTTCATAAACTCTCATACAGTATCCTTTTTTTTGAGGATATCCTGTAAGTAATGTTTTT
CTTTTTTTTTTTGGACCTCTGGCTTTTCTATCCGTTATTTGATTTATTGTAATCATTTAA
TAATTTTAATAATTTTATGTTTTGTAATAATATCGTTATTTGTAACATTTTTGTA
Length of full length seq. 235