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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH770
Library SL
(Link to library)
Clone ID SLH770
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11996-1
Original site URL
Representative seq. ID SLH770Z
(Link to Original site)
Representative DNA sequence 
>SLH770 (SLH770Q) /CSM/SL/SLH7-C/SLH770Q.Seq.d/
XXXXXXXXXXATGTGGTTTCCCACCATTCTATGCTTCATCTCAAAACTTATTATTTGAAA
AAATTTTAACCGCTGATTATGATTTCCCAGAACCAGAATGGACTCATGTCTCTGAACATG
CCAAAGCTTTCATTAGAAACTTAATTGTCAAAGATCCAGATCAACGTCATACTGCCAAAC
AATGTCTTGATGACCTTTGGCTCTCTGGTAGTGATCAATCAATTGGTTCTGCTGCTGATC
TCCACTCTCATTTCGCTGAAAAGATGAAGAAATATAATGACCAAAGAAGAGGTGGTCAAT
CANAAAANAATAAAATTTAATAATAATAATAATAA
sequence update 1998. 7.14
Translated Amino Acid sequence 
---CGFPPFYASSQNLLFEKILTADYDFPEPEWTHVSEHAKAFIRNLIVKDPDQRHTAKQ
CLDDLWLSGSDQSIGSAADLHSHFAEKMKKYNDQRRGGQSXXNKI******
Translated Amino Acid sequence (All Frames) 
Frame A:
---CGFPPFYASSQNLLFEKILTADYDFPEPEWTHVSEHAKAFIRNLIVKDPDQRHTAKQ
CLDDLWLSGSDQSIGSAADLHSHFAEKMKKYNDQRRGGQSXXNKI******


Frame B:
---vvshhsmlhlktyylkkf*plimisqnqnglmslnmpklslet*lskiqinvilpnn
vlmtfgslvvinqlvlllistlislkr*rnimtkeevvnxkxikfnnnnn


Frame C:
---wfptilcfisklii*knfnr*l*fprtrmdscl*tcqsfh*klncqrsrstsycqtm
s**plalw**sinwfcc*splsfr*kdeei**pkkrwsixkx*nliiiii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK695 (SSK695Q) /CSM/SS/SSK6-D/SSK695Q.Seq.d/                        577   e-164
SSJ513 (SSJ513Q) /CSM/SS/SSJ5-A/SSJ513Q.Seq.d/                        577   e-164
SSI101 (SSI101Q) /CSM/SS/SSI1-A/SSI101Q.Seq.d/                        577   e-164
SSH378 (SSH378Q) /CSM/SS/SSH3-D/SSH378Q.Seq.d/                        577   e-164
SSC643 (SSC643Q) /CSM/SS/SSC6-B/SSC643Q.Seq.d/                        577   e-164
SSA402 (SSA402Q) /CSM/SS/SSA4-A/SSA402Q.Seq.d/                        577   e-164
SLI715 (SLI715Q) /CSM/SL/SLI7-A/SLI715Q.Seq.d/                        577   e-164
SLH770 (SLH770Q) /CSM/SL/SLH7-C/SLH770Q.Seq.d/                        577   e-164
SLD285 (SLD285Q) /CSM/SL/SLD2-D/SLD285Q.Seq.d/                        577   e-164
SLC252 (SLC252Q) /CSM/SL/SLC2-C/SLC252Q.Seq.d/                        577   e-164
own update 2000.12.16
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039428) Dictyostelium discoideum slug cDNA, clone SLH770.      583   e-162  1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...   577   e-160  1
(AU053468) Dictyostelium discoideum slug cDNA, clone SLI715.      577   e-160  1
(AU052419) Dictyostelium discoideum slug cDNA, clone SLD285.      577   e-160  1
(AU038180) Dictyostelium discoideum slug cDNA, clone SSH378.      577   e-160  1
(AU034202) Dictyostelium discoideum slug cDNA, clone SLC252.      577   e-160  1
(C94009) Dictyostelium discoideum slug cDNA, clone SSK695.        577   e-160  1
(C91976) Dictyostelium discoideum slug cDNA, clone SSC643.        577   e-160  1
(C91258) Dictyostelium discoideum slug cDNA, clone SSJ513.        577   e-160  1
(C90109) Dictyostelium discoideum slug cDNA, clone SSI101.        577   e-160  1
dna update 2009. 6.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q869W6) RecName: Full=Probable calcium/calmodulin-dependent ser...   209   2e-53
AB076903_1(AB076903|pid:none) Ciona intestinalis Ci-CaM-K mRNA f...    87   2e-16
BC074183_1(BC074183|pid:none) Xenopus laevis MGC82022 protein, m...    81   1e-14
(Q63450) RecName: Full=Calcium/calmodulin-dependent protein kina...    80   2e-14
(Q14012) RecName: Full=Calcium/calmodulin-dependent protein kina...    80   2e-14
AC116982_54(AC116982|pid:none) Dictyostelium discoideum chromoso...    80   2e-14
PDBF(1A06) MOL_ID: 1; MOLECULE: CALCIUM/CALMODULIN-DEPENDENT PRO...    80   2e-14
AY890885_1(AY890885|pid:none) Synthetic construct Homo sapiens c...    80   2e-14
L24907_1(L24907|pid:none) Rattus norvegicus calcium/calmodulin-d...    80   2e-14
BC123625_1(BC123625|pid:none) Bos taurus calcium/calmodulin-depe...    80   2e-14
protein update 2009. 6. 4
PSORT 

 psg: 0.87  gvh: 0.34  alm: 0.55  top: 0.20  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SLH770 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLH770Z
3' end seq. 
>SLH770Z.Seq
----------ATGTGGTTTCCCACCATTCTATGCTTCATCTCAAAACTTATTATTTGAAA
AAATTTTAACCGCTGATTATGATTTCCCAGAACCAGAATGGACTCATGTCTCTGAACATG
CCAAAGCTTTCATTAGAAACTTAATTGTCAAAGATCCAGATCAACGTCATACTGCCAAAC
AATGTCTTGATGACCTTTGGCTCTCTGGTAGTGATCAATCAATTGGTTCTGCTGCTGATC
TCCACTCTCATTTCGCTGAAAAGATGAAGAAATATAATGACCAAAGAAGAGGTGGTCAAT
CANAAAANAATAAAATTTAATAATAATAATAATAA
Length of 3' end seq. 325
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -