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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH749
Library SL
(Link to library)
Clone ID SLH749
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15669-1
Original site URL
Representative seq. ID SLH749F
(Link to Original site)
Representative DNA sequence 
>SLH749 (SLH749Q) /CSM/SL/SLH7-C/SLH749Q.Seq.d/
AATAATGATTATTCACATTTACCTTCATATCTTAGACCAACTCAAGCAAGTTCAGCTTGG
TCAAGATCAAAAGTTGAACTTTCACCATCACCAAAGTGGAGATTCTCTCAAACTGTTCAA
GATAGACAATATATTTATGATAATCCATTACCAACTGGTATTAGTCCGTATTCGGAATTA
TTCTCTGAGAATAAACTTCATACACCAAAGAAACAATCAACTACCTCTTCACAACAAAAC
CAACCTTGGAAACCATCTTTAAAATCAACTACTTCAATACAAGATAATTGTCATAAAATA
ACTAAAAATACAACTTTTCGACCAATTTCACCACCACCTCCAAAACCAAATTTTTATACA
GTTAATAATAGTAATAATAACAATAATAATAATAACAATAATAATAATAATAATAATACC
XXXXXXXXXX
sequence update 1999. 2. 9
Translated Amino Acid sequence 
NNDYSHLPSYLRPTQASSAWSRSKVELSPSPKWRFSQTVQDRQYIYDNPLPTGISPYSEL
FSENKLHTPKKQSTTSSQQNQPWKPSLKSTTSIQDNCHKITKNTTFRPISPPPPKPNFYT
VNNSNNNNNNNNNNNNNNN---
Translated Amino Acid sequence (All Frames) 
Frame A:
NNDYSHLPSYLRPTQASSAWSRSKVELSPSPKWRFSQTVQDRQYIYDNPLPTGISPYSEL
FSENKLHTPKKQSTTSSQQNQPWKPSLKSTTSIQDNCHKITKNTTFRPISPPPPKPNFYT
VNNSNNNNNNNNNNNNNNN---


Frame B:
imiihiylhildqlkqvqlgqdqklnfhhhqsgdslklfkidnifmiihyqlvlvrirny
slrinfihqrnnqlplhnktnlgnhl*nqllqykiivik*lkiqlfdqfhhhlqnqifiq
liiviitiiiitiiiiiii---


Frame C:
**lftftfis*tnsskfslvkiks*tftitkveilsncsr*tiyl**sitnwy*svfgii
l*e*tsytketinylfttkptletifkinyfntr*ls*nn*kynfstnftttsktkflys
******q****q******y---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH749 (SLH749Q) /CSM/SL/SLH7-C/SLH749Q.Seq.d/                        718   0.0
SSM443 (SSM443Q) /CSM/SS/SSM4-B/SSM443Q.Seq.d/                        466   e-130
AHO187 (AHO187Q) /CSM/AH/AHO1-D/AHO187Q.Seq.d/                         38   0.11
AHM146 (AHM146Q) /CSM/AH/AHM1-B/AHM146Q.Seq.d/                         38   0.11
VHQ448 (VHQ448Q) /CSM/VH/VHQ4-B/VHQ448Q.Seq.d/                         34   1.7
VHK479 (VHK479Q) /CSM/VH/VHK4-D/VHK479Q.Seq.d/                         34   1.7
VHJ701 (VHJ701Q) /CSM/VH/VHJ7-A/VHJ701Q.Seq.d/                         34   1.7
SSJ593 (SSJ593Q) /CSM/SS/SSJ5-D/SSJ593Q.Seq.d/                         34   1.7
SSH419 (SSH419Q) /CSM/SS/SSH4-A/SSH419Q.Seq.d/                         34   1.7
SLC791 (SLC791Q) /CSM/SL/SLC7-D/SLC791Q.Seq.d/                         34   1.7
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU062140) Dictyostelium discoideum slug cDNA, clone SLH749.      718   0.0    1
(AU074913) Dictyostelium discoideum slug cDNA, clone SSM443.      448   e-122  1
(FG607393) stem_S022_C12.SEQ Opium poppy stem cDNA library P...    50   0.069  1
(EU168191) Heterosigma akashiwo strain CCMP 452 chloroplast,...    36   0.072  5
(AL391374) Human DNA sequence from clone RP11-631G24 on chro...    48   0.27   1
(ER502875) 1093015409355 Global-Ocean-Sampling_GS-35-01-01-1...    48   0.27   1
(CZ144315) OA_BBa0042E04.r OA_BBa Oryza alta genomic clone O...    48   0.27   1
(FG611075) stem_S068_C04.SEQ Opium poppy stem cDNA library P...    48   0.27   1
(CS374673) Sequence 776 from Patent WO2006034879.                  34   0.55   4
(CS604517) Sequence 3503 from Patent WO2007039234.                 36   0.73   2
dna update 2009. 6.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR382124_250(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    32   6.8
AM393545_1(AM393545|pid:none) Synthetic construct Homo sapiens c...    32   8.9
protein update 2009. 1.24
PSORT 

 psg: 0.75  gvh: 0.46  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SLH749 is mit
5' end seq. ID SLH749F
5' end seq. 
>SLH749F.Seq
AATAATGATTATTCACATTTACCTTCATATCTTAGACCAACTCAAGCAAGTTCAGCTTGG
TCAAGATCAAAAGTTGAACTTTCACCATCACCAAAGTGGAGATTCTCTCAAACTGTTCAA
GATAGACAATATATTTATGATAATCCATTACCAACTGGTATTAGTCCGTATTCGGAATTA
TTCTCTGAGAATAAACTTCATACACCAAAGAAACAATCAACTACCTCTTCACAACAAAAC
CAACCTTGGAAACCATCTTTAAAATCAACTACTTCAATACAAGATAATTGTCATAAAATA
ACTAAAAATACAACTTTTCGACCAATTTCACCACCACCTCCAAAACCAAATTTTTATACA
GTTAATAATAGTAATAATAACAATAATAATAATAACAATAATAATAATAATAATAATACC
----------
Length of 5' end seq. 420
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -