SLH682
Library SL
(Link to library)
Clone ID SLH682
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04200-1
Original site URL
Representative seq. ID SLH682P
(Link to Original site)
Representative DNA sequence
>SLH682 (SLH682Q) /CSM/SL/SLH6-D/SLH682Q.Seq.d/
TTACAATTCATATTTCCGTATAAGCATATTGAATTAGAACTTAAGGAATTAAAATTTAAA
AATAAAGATGCATATTTAGATCAACTTATAGCAAGAATATTTGAGTATAGTAAAAGTGAG
CTATATAAATTAATTTATAAGATATATAAAATAAGTTCAAAAAAATAATGAAAGTAGAAG
AAAGAGAGTATATAAAAAAGTATTGGGTAGGACTTATGGATGGAGTTGGTAGTATAGAAG
TAAATCATTATCGTATGAAAAATTTACAATATAGATTAGTATTAAATGTAAATGATAGTA
GTGAAAATATGGCTATGTTACTAAAGATTCAACAAGTAATTGGAGGTTATCTTATTAAAA
GAAAAGAGAAAGCTTTAATAGCCTGGACGATTAATAATAACATGCAAATAGAAGATGTGA
TAAAAATTTTCGAAGATTATCATTTAGTAACAGTTCGAAAAAGXXXXXXXXXXGTACCCC
AGTTCACATCATTTCTTTTTAAATTTTCTTTTAAAAATTGCAATTGATTTCTTTTTCGAA
CTGTTACTAAATTATAATCTTCGAAAATTTTTATCACATCTTCTATTTGCATTTTATTAT
TAATCGTCCAGGCTATTAAAGCTTTCTCTTTTCTTTTAATAAGATAACCTCCAATTACTT
GTTGAATCTTTAGTAACATAGCCATATTTTCACTACTATCATTTACATTTAATACTAATC
TATATTGTAAATTTTTCATACGATAATGATTTACTTCTATACTACCAACTCCATCCATAA
GTCCTACCCAATACTTTTTTATATACTCTCTTTCTTCTACTTTCATTATTTTTTTGAACT
TATTTTATATATCTTATAAATTAATTTATATAGCTCACTTTTACTATACTCAAATATTCT
TGCTATAAGTTGATCTAAATATGCATCTTTATTTTTAAATTTTAATTCCTTAAGTTCTAA
TTCAATATGCTTATACGGAAATATGAATTGTAAGGGGATCCTCTAGAGTCGACCTGCAGG
CATGCAAGCTTGG
sequence update 1999. 2. 9
Translated Amino Acid sequence
tihisv*ay*irt*giki*k*rcifrstyskni*v**k*ai*inl*di*NKFKKIMKVEE
REYIKKYWVGLMDGVGSIEVNHYRMKNLQYRLVLNVNDSSENMAMLLKIQQVIGGYLIKR
KEKALIAWTINNNMQIEDVIKIFEDYHLVTVRK---

---YPSSHHFFLNFLLKIAIDFFFELLLNYNLRKFLSHLLFAFYY*ssrllklslff**d
nlqllveslvt*pyfhyyhlhliliyivnfsydndlllyyqlhp*vlpntflytlfllls
lff*tyfiylin*fi*ltftilkyscykli*icififkf*flkf*fnmlirkyel*gdpl
estcrhasl


Translated Amino Acid sequence (All Frames)
Frame A:
lqfifpykhielelkelkfknkdayldqliarifeyskselykliykiykisskk**k*k
kesi*ksig*dlwmelvv*k*iiiv*kiynid*y*m*mivvkiwlcy*rfnk*levillk
ekrkl**pgrliitck*km**kfskiii**qfek---

---vpqftsflfkfsfkncn*flfrtvtkl*sskifitssicilllivqaikafsfllir
*ppitc*ifsniaifsllsftfntnlyckffir**ftsilptpsisptqyffiyslsstf
iiflnlfyisykliyiahfyytqifll*vdlnmhlyf*ilip*vliqyaytei*ivrgss
rvdlqackl

Frame B:
ynsyfrisiln*nlrn*nlkikmhi*inl*qeylsivkvsyin*firyik*vqknnesrr
krvykkvlgrtygwsw*yrskslsyekfti*isikck****kygyvtkdstsnwrlsy*k
kresfnsldd***hanrrcdknfrrlsfsnsskk---

---YPSSHHFFLNFLLKIAIDFFFELLLNYNLRKFLSHLLFAFYY*ssrllklslff**d
nlqllveslvt*pyfhyyhlhliliyivnfsydndlllyyqlhp*vlpntflytlfllls
lff*tyfiylin*fi*ltftilkyscykli*icififkf*flkf*fnmlirkyel*gdpl
estcrhasl

Frame C:
tihisv*ay*irt*giki*k*rcifrstyskni*v**k*ai*inl*di*NKFKKIMKVEE
REYIKKYWVGLMDGVGSIEVNHYRMKNLQYRLVLNVNDSSENMAMLLKIQQVIGGYLIKR
KEKALIAWTINNNMQIEDVIKIFEDYHLVTVRK---

---tpvhiisf*iff*klqlisfsncy*iiifenfyhifylhfiinrpgy*sflfsfnki
tsnyllnl**hshifttiiyi*y*sil*ifhtimiyfyttnsihksypilfyilsffyfh
yffelilyil*inlysslllysnilais*skyaslflnfnslssnsiclygnmnckgil*
srpagmqaw

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLH682 (SLH682Q) /CSM/SL/SLH6-D/SLH682Q.Seq.d/ 944 0.0
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/ 864 0.0
SLG825 (SLG825Q) /CSM/SL/SLG8-B/SLG825Q.Seq.d/ 84 5e-15
SLG638 (SLG638Q) /CSM/SL/SLG6-B/SLG638Q.Seq.d/ 84 5e-15
SLH429 (SLH429Q) /CSM/SL/SLH4-B/SLH429Q.Seq.d/ 80 8e-14
SLH147 (SLH147Q) /CSM/SL/SLH1-B/SLH147Q.Seq.d/ 80 8e-14
SLG834 (SLG834Q) /CSM/SL/SLG8-B/SLG834Q.Seq.d/ 80 8e-14
SLG745 (SLG745Q) /CSM/SL/SLG7-B/SLG745Q.Seq.d/ 80 8e-14
SLG623 (SLG623Q) /CSM/SL/SLG6-A/SLG623Q.Seq.d/ 80 8e-14
SLG383 (SLG383Q) /CSM/SL/SLG3-D/SLG383Q.Seq.d/ 80 8e-14

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU062120) Dictyostelium discoideum slug cDNA, clone SLH682. 505 0.0 3
(AU039384) Dictyostelium discoideum slug cDNA, clone SLH682. 517 0.0 2
(X81884) D.discoideum mitochondrial cox1 gene and cox2 gene. 505 0.0 2
(D50297) Dictyostelium discoideum mitochondrial cox1/2, ai2a... 505 0.0 2
(AB000109) Dictyostelium discoideum mitochondrial DNA, compl... 505 0.0 4
(AL480855) T. brucei sheared genomic DNA clone 228h02, rever... 88 8e-13 1
(CG748353) P042-1-H08.ya Ppa EcoRI BAC Library Pristionchus ... 78 2e-12 2
(CG757749) P053-1-D05.yb Ppa EcoRI BAC Library Pristionchus ... 78 3e-12 2
(AC015850) Homo sapiens chromosome 7 clone RP11-439A11 map 7... 86 3e-12 1
(AL477264) T. brucei sheared genomic DNA clone 194b07, rever... 86 3e-12 1
dna update 2009. 6.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

FJ648425_14(FJ648425|pid:none) Glomus intraradices isolate FACE#... 112 3e-23
AY347307_21(AY347307|pid:none) Penicillium marneffei strain MP1 ... 108 3e-22
H38888(H38888) COI intron 15 protein - Podospora anserina mitoch... 102 2e-20
AJ430679_9(AJ430679|pid:none) Saccharomyces servazzii complete m... 95 4e-18
EU337990_2(EU337990|pid:none) Volvox carteri f. nagariensis clon... 92 2e-17
EU760701_2(EU760701|pid:none) Volvox carteri f. nagariensis stra... 92 2e-17
EF204913_24(EF204913|pid:none) Pleurotus ostreatus mitochondrion... 81 5e-14
EF463011_58(EF463011|pid:none) Chlorokybus atmophyticus strain S... 80 1e-13
AY654900_6(AY654900|pid:none) Kluyveromyces lactis mitochondrion... 75 3e-12
S17998(S17998)gene COX1 intron 4 protein - yeast (Kluyveromyces ... 75 4e-12
protein update 2009. 6. 4
PSORT

psg: 0.40 gvh: 0.37 alm: 0.32 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
40.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for SLH682 is nuc

5' end seq. ID SLH682F
5' end seq.
>SLH682F.Seq
TTACAATTCATATTTCCGTATAAGCATATTGAATTAGAACTTAAGGAATTAAAATTTAAA
AATAAAGATGCATATTTAGATCAACTTATAGCAAGAATATTTGAGTATAGTAAAAGTGAG
CTATATAAATTAATTTATAAGATATATAAAATAAGTTCAAAAAAATAATGAAAGTAGAAG
AAAGAGAGTATATAAAAAAGTATTGGGTAGGACTTATGGATGGAGTTGGTAGTATAGAAG
TAAATCATTATCGTATGAAAAATTTACAATATAGATTAGTATTAAATGTAAATGATAGTA
GTGAAAATATGGCTATGTTACTAAAGATTCAACAAGTAATTGGAGGTTATCTTATTAAAA
GAAAAGAGAAAGCTTTAATAGCCTGGACGATTAATAATAACATGCAAATAGAAGATGTGA
TAAAAATTTTCGAAGATTATCATTTAGTAACAGTTCGAAAAAG----------
Length of 5' end seq. 463
3' end seq. ID SLH682Z
3' end seq.
>SLH682Z.Seq
----------GTACCCCAGTTCACATCATTTCTTTTTAAATTTTCTTTTAAAAATTGCAA
TTGATTTCTTTTTCGAACTGTTACTAAATTATAATCTTCGAAAATTTTTATCACATCTTC
TATTTGCATTTTATTATTAATCGTCCAGGCTATTAAAGCTTTCTCTTTTCTTTTAATAAG
ATAACCTCCAATTACTTGTTGAATCTTTAGTAACATAGCCATATTTTCACTACTATCATT
TACATTTAATACTAATCTATATTGTAAATTTTTCATACGATAATGATTTACTTCTATACT
ACCAACTCCATCCATAAGTCCTACCCAATACTTTTTTATATACTCTCTTTCTTCTACTTT
CATTATTTTTTTGAACTTATTTTATATATCTTATAAATTAATTTATATAGCTCACTTTTA
CTATACTCAAATATTCTTGCTATAAGTTGATCTAAATATGCATCTTTATTTTTAAATTTT
AATTCCTTAAGTTCTAATTCAATATGCTTATACGGAAATATGAATTGTAAGGGGATCCTC
TAGAGTCGACCTGCAGGCATGCAAGCTTGG
Length of 3' end seq. 560
Connected seq. ID SLH682P
Connected seq.
>SLH682P.Seq
TTACAATTCATATTTCCGTATAAGCATATTGAATTAGAACTTAAGGAATTAAAATTTAAA
AATAAAGATGCATATTTAGATCAACTTATAGCAAGAATATTTGAGTATAGTAAAAGTGAG
CTATATAAATTAATTTATAAGATATATAAAATAAGTTCAAAAAAATAATGAAAGTAGAAG
AAAGAGAGTATATAAAAAAGTATTGGGTAGGACTTATGGATGGAGTTGGTAGTATAGAAG
TAAATCATTATCGTATGAAAAATTTACAATATAGATTAGTATTAAATGTAAATGATAGTA
GTGAAAATATGGCTATGTTACTAAAGATTCAACAAGTAATTGGAGGTTATCTTATTAAAA
GAAAAGAGAAAGCTTTAATAGCCTGGACGATTAATAATAACATGCAAATAGAAGATGTGA
TAAAAATTTTCGAAGATTATCATTTAGTAACAGTTCGAAAAAG----------GTACCCC
AGTTCACATCATTTCTTTTTAAATTTTCTTTTAAAAATTGCAATTGATTTCTTTTTCGAA
CTGTTACTAAATTATAATCTTCGAAAATTTTTATCACATCTTCTATTTGCATTTTATTAT
TAATCGTCCAGGCTATTAAAGCTTTCTCTTTTCTTTTAATAAGATAACCTCCAATTACTT
GTTGAATCTTTAGTAACATAGCCATATTTTCACTACTATCATTTACATTTAATACTAATC
TATATTGTAAATTTTTCATACGATAATGATTTACTTCTATACTACCAACTCCATCCATAA
GTCCTACCCAATACTTTTTTATATACTCTCTTTCTTCTACTTTCATTATTTTTTTGAACT
TATTTTATATATCTTATAAATTAATTTATATAGCTCACTTTTACTATACTCAAATATTCT
TGCTATAAGTTGATCTAAATATGCATCTTTATTTTTAAATTTTAATTCCTTAAGTTCTAA
TTCAATATGCTTATACGGAAATATGAATTGTAAGGGGATCCTCTAGAGTCGACCTGCAGG
CATGCAAGCTTGG
Length of connected seq. 1023
Full length Seq ID -
Full length Seq. -
Length of full length seq. -