NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH621
Library SL
(Link to library)
Clone ID SLH621
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13024-1
Original site URL
Representative seq. ID SLH621Z
(Link to Original site)
Representative DNA sequence 
>SLH621 (SLH621Q) /CSM/SL/SLH6-A/SLH621Q.Seq.d/
XXXXXXXXXXCAATCATCAACCAAGACTGTCAACGGTAAGACCACCATTCAATCATCATC
AAGCTCATCATCATCCATCTCTAAACAATTCGTTCCAATGATCGTTTGTTCAGGTACTGC
TGATGTTGCTGGTAACCTCAATGTCGTTGCCTCAGAAGCCAATCAAGCTAAAATTGCCTC
TGGTACTGTATTCAAATTCATCTCAGCCCCAGTTGTTAAAGGTAATGTCTCCTCAGTTAG
CTGTCTCACCTCAAGCACTGCTGCTGCTGCTCAACAAGCTGCCGGTGCTGCTGCTGCTGC
TGCCCAAAAAGCTGCTATGGCTGCTGCCTCTAAAGTTTGGTCAATTGTAAATTCACCATG
TAACTGTGAATGTGGATTGAAGAGATTATAAATTGATTCAACTCCTCCTCTCCAATGACA
ATAAATTAAAATAATACAACTCATTCTTATTTTTCTTTATTCTAACCAATGTATTTGTCA
ATTAACTTATTAACTTTTTAAACACACCCTTTTCAATTTTAAAACAATAAAAATTTACAT
ATTAAAATTT
sequence update 1998. 7.14
Translated Amino Acid sequence 
---SSTKTVNGKTTIQSSSSSSSSISKQFVPMIVCSGTADVAGNLNVVASEANQAKIASG
TVFKFISAPVVKGNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAASKVWSIVNSPCN
CECGLKRL*idstpplq*q*ikiiqliliflysnqcicqlty*lfkhtlfnfktikiyil
kf
Translated Amino Acid sequence (All Frames) 
Frame A:
---nhqprlstvrppfnhhqahhhpslnnsfq*sfvqvllmllvtsmslpqkpiklklpl
vlysnssqpqllkvmspqlavspqalllllnklpvlllllpkkllwllplkfgql*ihhv
tvnvd*rdykliqlllsndnklk*ynsflfffiltnvfvn*linflntpfsilkq*kfty
*n


Frame B:
---iinqdcqr*dhhsiiikliiihl*tirsndrlfryc*ccw*pqcrclrsqss*nclw
yciqihlspsc*r*clls*lshlkhccccstscrccccccpkscygccl*slvnckftm*
l*mwieeiin*fnssspmtin*nntthsyfslf*pmylsinlltf*thpfqf*nnknlhi
ki


Frame C:
---SSTKTVNGKTTIQSSSSSSSSISKQFVPMIVCSGTADVAGNLNVVASEANQAKIASG
TVFKFISAPVVKGNVSSVSCLTSSTAAAAQQAAGAAAAAAQKAAMAAASKVWSIVNSPCN
CECGLKRL*idstpplq*q*ikiiqliliflysnqcicqlty*lfkhtlfnfktikiyil
kf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH621 (SLH621Q) /CSM/SL/SLH6-A/SLH621Q.Seq.d/                        490   e-137
SLH545 (SLH545Q) /CSM/SL/SLH5-B/SLH545Q.Seq.d/                        482   e-135
SLE412 (SLE412Q) /CSM/SL/SLE4-A/SLE412Q.Seq.d/                        482   e-135
SLE342 (SLE342Q) /CSM/SL/SLE3-B/SLE342Q.Seq.d/                        482   e-135
SLE320 (SLE320Q) /CSM/SL/SLE3-A/SLE320Q.Seq.d/                        482   e-135
SLE318 (SLE318Q) /CSM/SL/SLE3-A/SLE318Q.Seq.d/                        482   e-135
SLE216 (SLE216Q) /CSM/SL/SLE2-A/SLE216Q.Seq.d/                        482   e-135
SLB358 (SLB358Q) /CSM/SL/SLB3-C/SLB358Q.Seq.d/                        482   e-135
SLB147 (SLB147Q) /CSM/SL/SLB1-B/SLB147Q.Seq.d/                        482   e-135
SLA427 (SLA427Q) /CSM/SL/SLA4-B/SLA427Q.Seq.d/                        482   e-135
own update 2001. 8.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039355) Dictyostelium discoideum slug cDNA, clone SLH621.      442   0.0    3
(AU034706) Dictyostelium discoideum slug cDNA, clone SLE216.      442   0.0    3
(AU034776) Dictyostelium discoideum slug cDNA, clone SLE318.      442   0.0    3
(AU034778) Dictyostelium discoideum slug cDNA, clone SLE320.      442   0.0    3
(AU034962) Dictyostelium discoideum slug cDNA, clone SLE412.      442   0.0    3
(AU039318) Dictyostelium discoideum slug cDNA, clone SLH545.      442   0.0    3
(AU033540) Dictyostelium discoideum slug cDNA, clone SLB147.      442   0.0    3
(BJ409259) Dictyostelium discoideum cDNA clone:dds40f12, 3' ...   436   0.0    3
(BJ409753) Dictyostelium discoideum cDNA clone:dds42k03, 3' ...   436   0.0    3
(BJ403360) Dictyostelium discoideum cDNA clone:dds24k20, 3' ...   436   0.0    3
dna update 2009. 6.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U83087_1(U83087|pid:none) Dictyostelium discoideum rsc12 mRNA, p...   157   2e-37
AY524011_1(AY524011|pid:none) Paulownia tomentosa deficiens (DEF...    33   3.7
AY530539_1(AY530539|pid:none) Mimulus ringens deficiens (DEF) mR...    33   3.7
protein update 2009. 1.24
PSORT 

 psg: 0.83  gvh: 0.42  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.45  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	  4.0 %: peroxisomal

>> prediction for SLH621 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLH621Z
3' end seq. 
>SLH621Z.Seq
----------CAATCATCAACCAAGACTGTCAACGGTAAGACCACCATTCAATCATCATC
AAGCTCATCATCATCCATCTCTAAACAATTCGTTCCAATGATCGTTTGTTCAGGTACTGC
TGATGTTGCTGGTAACCTCAATGTCGTTGCCTCAGAAGCCAATCAAGCTAAAATTGCCTC
TGGTACTGTATTCAAATTCATCTCAGCCCCAGTTGTTAAAGGTAATGTCTCCTCAGTTAG
CTGTCTCACCTCAAGCACTGCTGCTGCTGCTCAACAAGCTGCCGGTGCTGCTGCTGCTGC
TGCCCAAAAAGCTGCTATGGCTGCTGCCTCTAAAGTTTGGTCAATTGTAAATTCACCATG
TAACTGTGAATGTGGATTGAAGAGATTATAAATTGATTCAACTCCTCCTCTCCAATGACA
ATAAATTAAAATAATACAACTCATTCTTATTTTTCTTTATTCTAACCAATGTATTTGTCA
ATTAACTTATTAACTTTTTAAACACACCCTTTTCAATTTTAAAACAATAAAAATTTACAT
ATTAAAATTT
Length of 3' end seq. 540
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -