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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH619
Library SL
(Link to library)
Clone ID SLH619
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16433-1
Original site URL
Representative seq. ID SLH619E
(Link to Original site)
Representative DNA sequence 
>SLH619 (SLH619Q) /CSM/SL/SLH6-A/SLH619Q.Seq.d/
GGTGAAGTTAAAACCTATGGTGGTGATAAATTTGAAGTCTCTATCACTGGTCCAGCTGAA
GAAATCACTCTCGATGCTATTGATAACCAAGATGGTACTTATACTGCCGCTTACTCTTTA
GTTGGTAATGGTCGTTTCTCAACTGGTGTCAAATTAAACGGTAAACACATTGAAGGTTCT
CCATTCAAACAAGTACTTGGTAACCCAGGTAAAAAGAATCCAGAAGTTAAATCTTTCACT
ACTACTCGTACTGCCAATTAAAAAAAAGATTAAGTAATAATAATAATAA
sequence update 1998. 7.14
Translated Amino Acid sequence 
GEVKTYGGDKFEVSITGPAEEITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNGKHIEGS
PFKQVLGNPGKKNPEVKSFTTTRTAN*kkd*viiii
Translated Amino Acid sequence (All Frames) 
Frame A:
GEVKTYGGDKFEVSITGPAEEITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNGKHIEGS
PFKQVLGNPGKKNPEVKSFTTTRTAN*kkd*viiii


Frame B:
vklkpmvvinlkslslvqlkkslsmllitkmvlilpltl*lvmvvsqlvsn*tvntlkvl
hsnkylvtqvkriqklnlslllvlpikkkik*****


Frame C:
*s*nlww**i*slyhwss*rnhsrcy**prwylycrllfsw*wsflnwcqikr*th*rfs
iqtstw*pr*kesrs*ifhyysycqlkkrlsnnnn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSE849 (SSE849Q) /CSM/SS/SSE8-C/SSE849Q.Seq.d/                        525   e-148
SSB629 (SSB629Q) /CSM/SS/SSB6-B/SSB629Q.Seq.d/                        525   e-148
SLH619 (SLH619Q) /CSM/SL/SLH6-A/SLH619Q.Seq.d/                        525   e-148
SLC316 (SLC316Q) /CSM/SL/SLC3-A/SLC316Q.Seq.d/                        525   e-148
SLC294 (SLC294Q) /CSM/SL/SLC2-D/SLC294Q.Seq.d/                        525   e-148
SLB808 (SLB808Q) /CSM/SL/SLB8-A/SLB808Q.Seq.d/                        525   e-148
SLH576 (SLH576Q) /CSM/SL/SLH5-D/SLH576Q.Seq.d/                        523   e-148
SLD124 (SLD124Q) /CSM/SL/SLD1-A/SLD124Q.Seq.d/                        523   e-148
SLC817 (SLC817Q) /CSM/SL/SLC8-A/SLC817Q.Seq.d/                        523   e-148
SLI678 (SLI678Q) /CSM/SL/SLI6-D/SLI678Q.Seq.d/                        521   e-147
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(X15430) Dictyostelium discoideum mRNA for gelation factor.       513   e-148  2
(AU284246) Dictyostelium discoideum gamete cDNA clone:FC-AC2...   513   e-148  2
(AU284327) Dictyostelium discoideum gamete cDNA clone:FC-AL2...   513   e-148  2
(AU060296) Dictyostelium discoideum slug cDNA, clone SLA896.      513   e-148  2
(AU034230) Dictyostelium discoideum slug cDNA, clone SLC294.      513   e-148  2
(AU034015) Dictyostelium discoideum slug cDNA, clone SLB808.      513   e-148  2
(C92495) Dictyostelium discoideum slug cDNA, clone SSE849.        513   e-148  2
(AU037223) Dictyostelium discoideum slug cDNA, clone SSB629.      513   e-148  2
(AU034244) Dictyostelium discoideum slug cDNA, clone SLC316.      513   e-148  2
(AU039353) Dictyostelium discoideum slug cDNA, clone SLH619.      513   e-148  2
dna update 2009. 6.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043045_1(AF043045|pid:none) Homo sapiens actin-binding protein...    47   3e-04
(Q9NRB5) RecName: Full=Filamin-B;          Short=FLN-B; AltName:...    47   3e-04
AB209889_1(AB209889|pid:none) Homo sapiens mRNA for filamin B, b...    47   3e-04
CR749793_1(CR749793|pid:none) Homo sapiens mRNA; cDNA DKFZp686A1...    47   3e-04
(Q80X90) RecName: Full=Filamin-B;          Short=FLN-B; AltName:...    47   3e-04
AF080395_1(AF080395|pid:none) Entamoeba histolytica actin bindin...    46   4e-04
T33758(T33758)hypothetical protein Y66H1B.2 - Caenorhabditis ele...    45   6e-04
AF100673_1(AF100673|pid:none) Caenorhabditis elegans cosmid Y66H...    45   6e-04
AB056474_1(AB056474|pid:none) Gallus gallus mRNA for filamin, co...    44   0.002
AE014297_2394(AE014297|pid:none) Drosophila melanogaster chromos...    43   0.003
protein update 2009. 7. 5
PSORT 

 psg: 0.79  gvh: 0.40  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.09  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SLH619 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLH619E
Full length Seq. 
>SLH619E.Seq
GGTGAAGTTAAAACCTATGGTGGTGATAAATTTGAAGTCTCTATCACTGGTCCAGCTGAA
GAAATCACTCTCGATGCTATTGATAACCAAGATGGTACTTATACTGCCGCTTACTCTTTA
GTTGGTAATGGTCGTTTCTCAACTGGTGTCAAATTAAACGGTAAACACATTGAAGGTTCT
CCATTCAAACAAGTACTTGGTAACCCAGGTAAAAAGAATCCAGAAGTTAAATCTTTCACT
ACTACTCGTACTGCCAATTAAAAAAAAGATTAAGTAATAATAATAATAA
Length of full length seq. 289