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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH444
Library SL
(Link to library)
Clone ID SLH444
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14601-1
Original site URL
Representative seq. ID SLH444Z
(Link to Original site)
Representative DNA sequence 
>SLH444 (SLH444Q) /CSM/SL/SLH4-B/SLH444Q.Seq.d/
XXXXXXXXXXGGAAAAGGATAAAGAAAAGGATGGCGGTCTATTTAGTATTGTAGGTGGAT
GGGTTGGTAACTTAACAGAACCAACACCACCTCCACCACCACCACCTTCATCAGTATCAG
CACAATCCACAGCAGAAGCAAATGCAATTTTATTAAATCCAACGACACAAGAGAATCATA
AAAAAGCAATGGATTTCTGGGTAACGAATACATCAACTACAACCACAACTACAACAACAA
CATCATCAAATAATATACCTTCATTGGTATCTGTACAAAATAACAATACTAGTAATAATA
ATATAAATAATAATAATAAAACTTCCAATACTACTGGAAGTAATGTATCATCATCGAATA
ATAAAGAAACTGTAAAAATAAATGTAACTTCATTAGATAGCGGCGGTAATAATAATGCAA
GTGGTAAAGATATAAGTAATGAACATTCACCAAAAAATAGAAAAGAAAAAGATAAAGAGA
AAAAAGATAAATCTGAAAAAAAAGAGAAAAAAGATAAAGAGAA
sequence update 1998. 7. 7
Translated Amino Acid sequence 
---EKDKEKDGGLFSIVGGWVGNLTEPTPPPPPPPSSVSAQSTAEANAILLNPTTQENHK
KAMDFWVTNTSTTTTTTTTTSSNNIPSLVSVQNNNTSNNNINNNNKTSNTTGSNVSSSNN
KETVKINVTSLDSGGNNNASGKDISNEHSPKNRKEKDKEKKDKSEKKEKKDKE
Translated Amino Acid sequence (All Frames) 
Frame A:
---EKDKEKDGGLFSIVGGWVGNLTEPTPPPPPPPSSVSAQSTAEANAILLNPTTQENHK
KAMDFWVTNTSTTTTTTTTTSSNNIPSLVSVQNNNTSNNNINNNNKTSNTTGSNVSSSNN
KETVKINVTSLDSGGNNNASGKDISNEHSPKNRKEKDKEKKDKSEKKEKKDKE


Frame B:
---krikkrmavylvl*vdglvt*qnqhhlhhhhlhqyqhnpqqkqmqfy*iqrhkriik
kqwisg*rihqlqpqlqqqhhqiiylhwylykitilviii*iiiiklpillevmyhhrii
kkl*k*m*lh*iaaviimqvvki*vmnihqkiekkkikrkkinlkkkrkkikr


Frame C:
---kg*rkgwrsi*ycrwmgw*lnrtnttsttttfisistihsrskcnfiksndtres*k
sngflgneyinynhnynnniik*ytfigictk*qy****yk****nfqyywk*ciiie**
rncknkcnfir*rr***ckw*ryk**tftkk*krkr*rekr*i*kkrekr*re
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH444 (SLH444Q) /CSM/SL/SLH4-B/SLH444Q.Seq.d/                        369   e-101
SLB489 (SLB489Q) /CSM/SL/SLB4-D/SLB489Q.Seq.d/                        341   6e-93
SHG496 (SHG496Q) /CSM/SH/SHG4-D/SHG496Q.Seq.d/                        172   3e-42
VSA877 (VSA877Q) /CSM/VS/VSA8-D/VSA877Q.Seq.d/                         56   6e-07
SFH110 (SFH110Q) /CSM/SF/SFH1-A/SFH110Q.Seq.d/                         56   6e-07
AFI767 (AFI767Q) /CSM/AF/AFI7-C/AFI767Q.Seq.d/                         56   6e-07
VSK122 (VSK122Q) /CSM/VS/VSK1-A/VSK122Q.Seq.d/                         50   3e-05
VHP815 (VHP815Q) /CSM/VH/VHP8-A/VHP815Q.Seq.d/                         50   3e-05
VHP762 (VHP762Q) /CSM/VH/VHP7-C/VHP762Q.Seq.d/                         50   3e-05
VHH277 (VHH277Q) /CSM/VH/VHH2-D/VHH277Q.Seq.d/                         50   3e-05
own update 2004. 7.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU040013) Dictyostelium discoideum slug cDNA, clone SLH444.      281   e-175  3
(AY232267) Dictyostelium discoideum putative protein Roco5 (...   281   e-173  3
(AU060787) Dictyostelium discoideum slug cDNA, clone SLB489.      281   e-105  2
(AU033827) Dictyostelium discoideum slug cDNA, clone SLB489.      212   1e-50  1
(BJ394914) Dictyostelium discoideum cDNA clone:dds36p24, 5' ...   172   9e-39  1
(BJ406945) Dictyostelium discoideum cDNA clone:dds36p24, 3' ...   113   7e-21  1
(AC168751) Strongylocentrotus purpuratus clone R3-3004M17, W...    56   7e-04  2
(EC824745) SME00007878 esmbsro2 Sawyeria marylandensis cDNA,...    56   0.001  1
(EC824091) SME00007940 esmbsro2 Sawyeria marylandensis cDNA,...    56   0.001  1
(EC823945) SME00006892 esmbsro2 Sawyeria marylandensis cDNA,...    56   0.001  1
dna update 2009. 6.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q1ZXD6) RecName: Full=Probable serine/threonine-protein kinase ...   173   3e-42
protein update 2009. 1.24
PSORT 

 psg: 0.75  gvh: 0.47  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.06  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SLH444 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLH444Z
3' end seq. 
>SLH444Z.Seq
----------GGAAAAGGATAAAGAAAAGGATGGCGGTCTATTTAGTATTGTAGGTGGAT
GGGTTGGTAACTTAACAGAACCAACACCACCTCCACCACCACCACCTTCATCAGTATCAG
CACAATCCACAGCAGAAGCAAATGCAATTTTATTAAATCCAACGACACAAGAGAATCATA
AAAAAGCAATGGATTTCTGGGTAACGAATACATCAACTACAACCACAACTACAACAACAA
CATCATCAAATAATATACCTTCATTGGTATCTGTACAAAATAACAATACTAGTAATAATA
ATATAAATAATAATAATAAAACTTCCAATACTACTGGAAGTAATGTATCATCATCGAATA
ATAAAGAAACTGTAAAAATAAATGTAACTTCATTAGATAGCGGCGGTAATAATAATGCAA
GTGGTAAAGATATAAGTAATGAACATTCACCAAAAAATAGAAAAGAAAAAGATAAAGAGA
AAAAAGATAAATCTGAAAAAAAAGAGAAAAAAGATAAAGAGAA
Length of 3' end seq. 513
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -