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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH341
Library SL
(Link to library)
Clone ID SLH341
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13443-1
Original site URL
Representative seq. ID SLH341Z
(Link to Original site)
Representative DNA sequence 
>SLH341 (SLH341Q) /CSM/SL/SLH3-B/SLH341Q.Seq.d/
XXXXXXXXXXAATCTGCTGGTATTAAGAAGAGTGAATTAAAGAATGCAGAAACTGCTCAA
TTCATTGTCAATATCATTGGTGAACAAATGGTTGGTGGTTCAGCTCCACCACCAACTCAA
CCAGGTAGATCAGCTCCACCAGCTCCACCATCTTCAAACCAACCAGGTAGATCAGCTCCA
CCACCACCACCATCTGTTGGTAAAAGTGCTCCACCACCACCACCACCATCCCATAAGACA
CCTGCAGCTCCACCATCAGGCGGAGGTGCTCCACCACCACCACCACCTCCACCACCACCT
TCTAGTGGTCCACCACCTCNNNNACCACCAATGGCCAGTGCTCCTCCATCATCAGGAGGT
GGTGGTGCCAGCGGCGGTGGAAGAAATGATCTTTTGGCTTCCATTCGTAGTGGTGCAAGT
CTTAAGGCTGTTGATAAAACCAATCCACTCCCAGATATTCAAAGTCTTGGTAATGAAGGT
TCACGTTCTTTAGCTGATACTTTAGCTGCAGCTATGGCTAATCGTAGAGGTGGTATGAGA
GAAGATGATGAAGAAGATGATGATGACGATGATGAATGGTCAGATTATTAAATTATTCTT
TAACAAAATTCAAATTCAAAAAAATCATTAAATAAAGATTTCTTTATTTCTTTCACC
sequence update 1998. 7. 7
Translated Amino Acid sequence 
---SAGIKKSELKNAETAQFIVNIIGEQMVGGSAPPPTQPGRSAPPAPPSSNQPGRSAPP
PPPSVGKSAPPPPPPSHKTPAAPPSGGGAPPPPPPPPPPSSGPPPXXPPMASAPPSSGGG
GASGGGRNDLLASIRSGASLKAVDKTNPLPDIQSLGNEGSRSLADTLAAAMANRRGGMRE
DDEEDDDDDDEWSDY*iil*qnsnskkslnkdffisft
Translated Amino Acid sequence (All Frames) 
Frame A:
---icwy*ee*ikecrncsihcqyhw*tngwwfssttnstr*isstsstifkptr*isst
ttticw*kcstttttip*dtcsstirrrcstttttstttf*wsttsxttngqcssiirrw
wcqrrwkk*sfgfhs*wcks*gc**nqstprysksw**rftffs*yfscsyg*s*rwyer
r**rr***r**mvrllnysltkfkfkkiik*rflyffh


Frame B:
---SAGIKKSELKNAETAQFIVNIIGEQMVGGSAPPPTQPGRSAPPAPPSSNQPGRSAPP
PPPSVGKSAPPPPPPSHKTPAAPPSGGGAPPPPPPPPPPSSGPPPXXPPMASAPPSSGGG
GASGGGRNDLLASIRSGASLKAVDKTNPLPDIQSLGNEGSRSLADTLAAAMANRRGGMRE
DDEEDDDDDDEWSDY*iil*qnsnskkslnkdffisft


Frame C:
---llvlrrvn*rmqkllnslsislvnkwlvvqlhhqlnqvdqlhqlhhlqtnqvdqlhh
hhhllvkvlhhhhhhpirhlqlhhqaevlhhhhhlhhhllvvhhlxxhqwpvllhhqevv
vpaaveemifwlpfvvvqvlrllikpihsqifkvlvmkvhvl*lil*lqlwlivevv*ek
mmkkmmmtmmngqiiklffnkiqiqknh*ikislfls
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN644 (VFN644Q) /CSM/VF/VFN6-B/VFN644Q.Seq.d/                        440   e-122
VFD730 (VFD730Q) /CSM/VF/VFD7-B/VFD730Q.Seq.d/                        440   e-122
VFA863 (VFA863Q) /CSM/VF/VFA8-C/VFA863Q.Seq.d/                        440   e-122
SLH341 (SLH341Q) /CSM/SL/SLH3-B/SLH341Q.Seq.d/                        440   e-122
SHE721 (SHE721Q) /CSM/SH/SHE7-A/SHE721Q.Seq.d/                        440   e-122
SFK712 (SFK712Q) /CSM/SF/SFK7-A/SFK712Q.Seq.d/                        440   e-122
SFJ736 (SFJ736Q) /CSM/SF/SFJ7-B/SFJ736Q.Seq.d/                        440   e-122
SFF823 (SFF823Q) /CSM/SF/SFF8-A/SFF823Q.Seq.d/                        440   e-122
SFC807 (SFC807Q) /CSM/SF/SFC8-A/SFC807Q.Seq.d/                        440   e-122
CFG349 (CFG349Q) /CSM/CF/CFG3-C/CFG349Q.Seq.d/                        440   e-122
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039281) Dictyostelium discoideum slug cDNA, clone SLH341.      404   0.0    5
(AF305060) Dictyostelium discoideum Wiscott-Aldrich syndrome...   404   0.0    5
(BJ393918) Dictyostelium discoideum cDNA clone:dds33j05, 5' ...   404   0.0    5
(BJ435781) Dictyostelium discoideum cDNA clone:ddv28g12, 3' ...   404   0.0    5
(BJ405823) Dictyostelium discoideum cDNA clone:dds33j05, 3' ...   404   0.0    5
(BJ342636) Dictyostelium discoideum cDNA clone:dda14m22, 3' ...   404   0.0    5
(BJ399481) Dictyostelium discoideum cDNA clone:dds6n02, 3' e...   404   e-163  6
(AU039202) Dictyostelium discoideum slug cDNA, clone SLH135.      404   e-152  4
(C89964) Dictyostelium discoideum slug cDNA, clone SSG705.        404   e-152  4
(BJ372664) Dictyostelium discoideum cDNA clone:ddc13i14, 3' ...   404   e-131  5
dna update 2009. 5.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF305060_1(AF305060|pid:none) Dictyostelium discoideum Wiscott-A...    83   8e-15
AC117076_18(AC117076|pid:none) Dictyostelium discoideum chromoso...    39   0.10
protein update 2009. 1.24
PSORT 

 psg: 0.69  gvh: 0.41  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SLH341 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLH341Z
3' end seq. 
>SLH341Z.Seq
----------AATCTGCTGGTATTAAGAAGAGTGAATTAAAGAATGCAGAAACTGCTCAA
TTCATTGTCAATATCATTGGTGAACAAATGGTTGGTGGTTCAGCTCCACCACCAACTCAA
CCAGGTAGATCAGCTCCACCAGCTCCACCATCTTCAAACCAACCAGGTAGATCAGCTCCA
CCACCACCACCATCTGTTGGTAAAAGTGCTCCACCACCACCACCACCATCCCATAAGACA
CCTGCAGCTCCACCATCAGGCGGAGGTGCTCCACCACCACCACCACCTCCACCACCACCT
TCTAGTGGTCCACCACCTCNNNNACCACCAATGGCCAGTGCTCCTCCATCATCAGGAGGT
GGTGGTGCCAGCGGCGGTGGAAGAAATGATCTTTTGGCTTCCATTCGTAGTGGTGCAAGT
CTTAAGGCTGTTGATAAAACCAATCCACTCCCAGATATTCAAAGTCTTGGTAATGAAGGT
TCACGTTCTTTAGCTGATACTTTAGCTGCAGCTATGGCTAATCGTAGAGGTGGTATGAGA
GAAGATGATGAAGAAGATGATGATGACGATGATGAATGGTCAGATTATTAAATTATTCTT
TAACAAAATTCAAATTCAAAAAAATCATTAAATAAAGATTTCTTTATTTCTTTCACC
Length of 3' end seq. 647
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -