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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH306
Library SL
(Link to library)
Clone ID SLH306
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U01356-1|Contig-U16528-1
Original site URL
Representative seq. ID SLH306P
(Link to Original site)
Representative DNA sequence 
>SLH306 (SLH306Q) /CSM/SL/SLH3-A/SLH306Q.Seq.d/
CAAGAAAATAATAATAATAAAAAAACACATATGCAATGACAAATATAATAAAATCTTTTA
TAACTAGAAATACATATTTAAATAAATTATCACCATCACCATACCAATTTAATAAATATT
ATTCAAATTCAATATCAACACCACCAACACATTCATATGAAAAAAAACAACAACCAATTC
AAAATGTTGATGATAAAAAATATATTTTAACAGATAGATTTAATAGACATCATACTTATT
TAAGAATATCATTAACAGAAAGATGCAATTTACGTTGTAAATATTGTATGCCTGAAGAAG
GAGTAATGTTATCACAAGCTGATAAAATTTTAACCACTGATGAAATTATTAGATTATCAA
AATTATTCGTATCAGCAGGTGTAAATAAAATTAGATTCACTGGTGGTGAACCATTAGTTA
GAAAAGATGTTGAACCATTAATTGAAGAAGTTGGTAAAATTAAAGGATTACAAAAGATTG
GAATAACAACAAATGGAATATTXXXXXXXXXXAAATTAGATAATATAAAAGTTAAAGTTA
ATTGTGTAATAATGAAAGGTTTAAATGATATGGAGATTTGCGATTTTGTTGAAATGACAA
GAGATAAATCAGTAGAAATTAGGTTTATTGAATATATGCCATTTGATGGTAACCTTTGGA
GTGATAAAAAGTTTTTATCATATACTGATATGATTAAAATTATACATGAAAAGTATCCAA
CATTTAAAAAGTATACAATTGAAGAAGAGGAACCAAATAATACATCGAAAACATATCATG
TACCAGGTTTTAAAGGTAAAGTTGGTTTCATTACATCAATGAGTGAACATTTTTGTTCAT
CTTGTAATAGATTAAGAATTACTGCAGATGGAAACCTAAAGGTTTGTCTCTTTGGTAATA
CTGAGGTAAATCTTAGAGATAGAATTAGAGATGGTGCATCCGATCAACAATTATTAGAAA
TAATAAATGCCGCTGTTTTAAAGAAAAAAGCTTCTCATGCAGGTATGTATGAGATTGCTC
AAAATAAAAATAGACCAATGATTTTAATTGGAGGTTAATAAAAATAAAATAAAATAAAAT
AAAAT
sequence update 1999. 2. 9
Translated Amino Acid sequence 
rk****KNTYAMTNIIKSFITRNTYLNKLSPSPYQFNKYYSNSISTPPTHSYEKKQQPIQ
NVDDKKYILTDRFNRHHTYLRISLTERCNLRCKYCMPEEGVMLSQADKILTTDEIIRLSK
LFVSAGVNKIRFTGGEPLVRKDVEPLIEEVGKIKGLQKIGITTNGI---

---KLDNIKVKVNCVIMKGLNDMEICDFVEMTRDKSVEIRFIEYMPFDGNLWSDKKFLSY
TDMIKIIHEKYPTFKKYTIEEEEPNNTSKTYHVPGFKGKVGFITSMSEHFCSSCNRLRIT
ADGNLKVCLFGNTEVNLRDRIRDGASDQQLLEIINAAVLKKKASHAGMYEIAQNKNRPMI
LIGG**k*nkik*n
Translated Amino Acid sequence (All Frames) 
Frame A:
qennnnkkthmq*qi**nll*leihi*inyhhhhtnliniiqiqyqhhqhihmkknnnqf
kmlmiknif*qidlidiili*eyh*qkdaiyvvnivclkke*cyhklikf*plmklldyq
nysyqqv*ikldslvvnh*lekmlnh*lkklvklkdykrle*qqmey---

---KLDNIKVKVNCVIMKGLNDMEICDFVEMTRDKSVEIRFIEYMPFDGNLWSDKKFLSY
TDMIKIIHEKYPTFKKYTIEEEEPNNTSKTYHVPGFKGKVGFITSMSEHFCSSCNRLRIT
ADGNLKVCLFGNTEVNLRDRIRDGASDQQLLEIINAAVLKKKASHAGMYEIAQNKNRPMI
LIGG**k*nkik*n

Frame B:
kkiiiikkhicndkynkifyn*kyifk*iititipi**ilfkfninttntfi*kktttns
kc***kiyfnr*i**tsylfkniinrkmqftl*ilya*rrsnvits**nfnh**ny*iik
iirisrck*n*ihww*tis*krc*tin*rsw*n*ritkdwnnnkwni---

---n*ii*klkliv***kv*miwrfaillk*qeinq*klgllnichlmvtfgviksfyhi
li*lklymksiqhlksiqlkkrnqiihrkhimyqvlkvklvslhq*vnifvhlvid*ell
qmet*rfvslvilr*ileielemvhpinny*k**mplf*rkkllmqvcmrllkikidq*f
*levnknkik*nk

Frame C:
rk****KNTYAMTNIIKSFITRNTYLNKLSPSPYQFNKYYSNSISTPPTHSYEKKQQPIQ
NVDDKKYILTDRFNRHHTYLRISLTERCNLRCKYCMPEEGVMLSQADKILTTDEIIRLSK
LFVSAGVNKIRFTGGEPLVRKDVEPLIEEVGKIKGLQKIGITTNGI---

---ir*yks*s*lcnnerfk*ygdlrfc*ndkr*isrn*vy*iyai*w*ple**kvfiiy
*yd*nyt*kvsni*kvyn*rrgtk*yienisctrf*r*swfhyine*tflfil**iknyc
rwkpkglslw*y*gks*r*n*rwcirstiirnnkcrcfkeksfscryv*dcsk*k*tndf
nwrlikik*nkik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH306 (SLH306Q) /CSM/SL/SLH3-A/SLH306Q.Seq.d/                       1877   0.0
VFD705 (VFD705Q) /CSM/VF/VFD7-A/VFD705Q.Seq.d/                        971   0.0
VFD505 (VFD505Q) /CSM/VF/VFD5-A/VFD505Q.Seq.d/                        971   0.0
VHO771 (VHO771Q) /CSM/VH/VHO7-C/VHO771Q.Seq.d/                         42   0.018
SSE294 (SSE294Q) /CSM/SS/SSE2-D/SSE294Q.Seq.d/                         42   0.018
VHK249 (VHK249Q) /CSM/VH/VHK2-C/VHK249Q.Seq.d/                         40   0.069
FC-BN06 (FC-BN06Q) /CSM/FC/FC-BN/FC-BN06Q.Seq.d/                       40   0.069
SSM387 (SSM387Q) /CSM/SS/SSM3-D/SSM387Q.Seq.d/                         38   0.27
SSG120 (SSG120Q) /CSM/SS/SSG1-A/SSG120Q.Seq.d/                         38   0.27
SFK836 (SFK836Q) /CSM/SF/SFK8-B/SFK836Q.Seq.d/                         38   0.27
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039263) Dictyostelium discoideum slug cDNA, clone SLH306.     1007   0.0    1
(BJ430646) Dictyostelium discoideum cDNA clone:ddv8j01, 3' e...   593   0.0    2
(BJ430642) Dictyostelium discoideum cDNA clone:ddv8i01, 3' e...   476   0.0    4
(BJ412362) Dictyostelium discoideum cDNA clone:ddv8j01, 5' e...   664   0.0    2
(AU062038) Dictyostelium discoideum slug cDNA, clone SLH306.      664   0.0    2
(BJ412358) Dictyostelium discoideum cDNA clone:ddv8i01, 5' e...   658   0.0    2
(BI747135) rm36d04.y1 Meloidogyne arenaria egg pAMP1 v1 Chia...    72   8e-23  3
(BM774794) ra97g03.y1 Meloidogyne incognita egg pAMP1 Bird M...    72   8e-23  3
(BM773715) ra85b05.y1 Meloidogyne incognita egg pAMP1 Bird M...    72   2e-20  3
(BM881593) rb11g01.y1 Meloidogyne incognita egg pAMP1 Bird M...    58   1e-18  3
dna update 2009. 5.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54NM6) RecName: Full=Molybdenum cofactor biosynthesis protein 1;    657   0.0
BC126847_1(BC126847|pid:none) Bos taurus molybdenum cofactor syn...   338   2e-91
AE014296_2010(AE014296|pid:none) Drosophila melanogaster chromos...   337   3e-91
AF214021_1(AF214021|pid:none) Drosophila melanogaster molybdenum...   337   3e-91
BC074319_1(BC074319|pid:none) Xenopus laevis MGC84142 protein, m...   334   3e-90
AF034374_1(AF034374|pid:none) Homo sapiens molybdenum cofactor b...   334   4e-90
CR860199_1(CR860199|pid:none) Pongo abelii mRNA; cDNA DKFZp469D1...   333   8e-90
AP007151_919(AP007151|pid:none) Aspergillus oryzae RIB40 genomic...   332   1e-89
AC006533_2(AC006533|pid:none) Arabidopsis thaliana chromosome 2 ...   332   1e-89
AL136089_6(AL136089|pid:none) Human DNA sequence from clone RP1-...   330   7e-89
protein update 2009. 6. 4
PSORT 

 psg: 0.67  gvh: 0.32  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.47  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: peroxisomal

>> prediction for SLH306 is mit
5' end seq. ID SLH306F
5' end seq. 
>SLH306F.Seq
CAAGAAAATAATAATAATAAAAAAACACATATGCAATGACAAATATAATAAAATCTTTTA
TAACTAGAAATACATATTTAAATAAATTATCACCATCACCATACCAATTTAATAAATATT
ATTCAAATTCAATATCAACACCACCAACACATTCATATGAAAAAAAACAACAACCAATTC
AAAATGTTGATGATAAAAAATATATTTTAACAGATAGATTTAATAGACATCATACTTATT
TAAGAATATCATTAACAGAAAGATGCAATTTACGTTGTAAATATTGTATGCCTGAAGAAG
GAGTAATGTTATCACAAGCTGATAAAATTTTAACCACTGATGAAATTATTAGATTATCAA
AATTATTCGTATCAGCAGGTGTAAATAAAATTAGATTCACTGGTGGTGAACCATTAGTTA
GAAAAGATGTTGAACCATTAATTGAAGAAGTTGGTAAAATTAAAGGATTACAAAAGATTG
GAATAACAACAAATGGAATATT----------
Length of 5' end seq. 502
3' end seq. ID SLH306Z
3' end seq. 
>SLH306Z.Seq
----------AAATTAGATAATATAAAAGTTAAAGTTAATTGTGTAATAATGAAAGGTTT
AAATGATATGGAGATTTGCGATTTTGTTGAAATGACAAGAGATAAATCAGTAGAAATTAG
GTTTATTGAATATATGCCATTTGATGGTAACCTTTGGAGTGATAAAAAGTTTTTATCATA
TACTGATATGATTAAAATTATACATGAAAAGTATCCAACATTTAAAAAGTATACAATTGA
AGAAGAGGAACCAAATAATACATCGAAAACATATCATGTACCAGGTTTTAAAGGTAAAGT
TGGTTTCATTACATCAATGAGTGAACATTTTTGTTCATCTTGTAATAGATTAAGAATTAC
TGCAGATGGAAACCTAAAGGTTTGTCTCTTTGGTAATACTGAGGTAAATCTTAGAGATAG
AATTAGAGATGGTGCATCCGATCAACAATTATTAGAAATAATAAATGCCGCTGTTTTAAA
GAAAAAAGCTTCTCATGCAGGTATGTATGAGATTGCTCAAAATAAAAATAGACCAATGAT
TTTAATTGGAGGTTAATAAAAATAAAATAAAATAAAATAAAAT
Length of 3' end seq. 573
Connected seq. ID SLH306P
Connected seq. 
>SLH306P.Seq
CAAGAAAATAATAATAATAAAAAAACACATATGCAATGACAAATATAATAAAATCTTTTA
TAACTAGAAATACATATTTAAATAAATTATCACCATCACCATACCAATTTAATAAATATT
ATTCAAATTCAATATCAACACCACCAACACATTCATATGAAAAAAAACAACAACCAATTC
AAAATGTTGATGATAAAAAATATATTTTAACAGATAGATTTAATAGACATCATACTTATT
TAAGAATATCATTAACAGAAAGATGCAATTTACGTTGTAAATATTGTATGCCTGAAGAAG
GAGTAATGTTATCACAAGCTGATAAAATTTTAACCACTGATGAAATTATTAGATTATCAA
AATTATTCGTATCAGCAGGTGTAAATAAAATTAGATTCACTGGTGGTGAACCATTAGTTA
GAAAAGATGTTGAACCATTAATTGAAGAAGTTGGTAAAATTAAAGGATTACAAAAGATTG
GAATAACAACAAATGGAATATT----------AAATTAGATAATATAAAAGTTAAAGTTA
ATTGTGTAATAATGAAAGGTTTAAATGATATGGAGATTTGCGATTTTGTTGAAATGACAA
GAGATAAATCAGTAGAAATTAGGTTTATTGAATATATGCCATTTGATGGTAACCTTTGGA
GTGATAAAAAGTTTTTATCATATACTGATATGATTAAAATTATACATGAAAAGTATCCAA
CATTTAAAAAGTATACAATTGAAGAAGAGGAACCAAATAATACATCGAAAACATATCATG
TACCAGGTTTTAAAGGTAAAGTTGGTTTCATTACATCAATGAGTGAACATTTTTGTTCAT
CTTGTAATAGATTAAGAATTACTGCAGATGGAAACCTAAAGGTTTGTCTCTTTGGTAATA
CTGAGGTAAATCTTAGAGATAGAATTAGAGATGGTGCATCCGATCAACAATTATTAGAAA
TAATAAATGCCGCTGTTTTAAAGAAAAAAGCTTCTCATGCAGGTATGTATGAGATTGCTC
AAAATAAAAATAGACCAATGATTTTAATTGGAGGTTAATAAAAATAAAATAAAATAAAAT
AAAAT
Length of connected seq. 1075
Full length Seq ID -
Full length Seq. -
Length of full length seq. -