SLH295 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SLH295
Library	SL (Link to library)
Clone ID	SLH295 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15436-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SL/SLH2-D/SLH295Q.Seq.d/
Representative seq. ID	SLH295E (Link to Original site)
Representative DNA sequence	>SLH295 (SLH295Q) /CSM/SL/SLH2-D/SLH295Q.Seq.d/ CAAAAAGCACCACAAGTTACTTACTTAGAAGTCGGATCATTAGTTGGTCACAACGGTTTT GTCACCTCTATTGCCGTTTCACCAGAAAACCCAGATACCATCATTTCATCATCACGTGAT AAGACTGTTATGGTATGGCAATTAACCCCAACTGATGCCACCTCACCAGGTAAAGCCCAC AGATCACTCAAGGGTCACTCACACTTTGTTCAAGATGTTGTCATTTCCCACGACGGTCAA TTCGCCTTATCAGGTTCATGGGATAATACCTTAAGATTATGGGATATCACCAAAGGTGTT TCAACCCGTCTCTTCAAAGGTCACACTCAAGATGTTATGTCTGTTGCCTTCTCATCAGAC AACCGTCAAATCATTTCAGGTTCACGTGATGCCACCATCAAAGTTTGGAACACCCTCGGT GAATGTAAATTCACTTTAGAAGGTCCAGAAGCTCATCAAGATTGGGTTTCATGTATCAGA TTCTCACCAAACACCCCAACCATCGTTTCAGGTTCATGGGATAACAAAGTTAAGATCTGG GATATCAAGAGCTTCAAATGCAACCACACCTTAACTGACCATACCGGTTACGTCAACACT GTCACCATCTCTCCAGACGGTTCATTATGTGCCTCTGGTGGTAAAGATACCTTTGCTTGT CTCTGGGAATTATCATCTGGTAAACCATTATACAAATTAGAAGCTCGTAACACCATCAAT GCTCTTGCTTTCTCACCAAACAAATATTGGTTATCTGCTGCCACTGATGACAAAATCATC ATTTGGGATCTCCTCACCAAACAAGTTCTCGCTGAAATCGTCCCAGAAGTCAAAGAACAA GCTTTCGACTCAAAGAAAAAGAAAGAATCAAAACCAAAAGCACCAGCTTGTCTCTCCCTC GCTTGGTCTGCTGATGGTTCAGTCTTATATGCTGGTTACAATGATGGTTTAATCCGTGTT TACAAATCATCATCCCAATAAATTTTTTAATTAAAATTTCAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAA
sequence update	1999. 7.21
Translated Amino Acid sequence	QKAPQVTYLEVGSLVGHNGFVTSIAVSPENPDTIISSSRDKTVMVWQLTPTDATSPGKAH RSLKGHSHFVQDVVISHDGQFALSGSWDNTLRLWDITKGVSTRLFKGHTQDVMSVAFSSD NRQIISGSRDATIKVWNTLGECKFTLEGPEAHQDWVSCIRFSPNTPTIVSGSWDNKVKIW DIKSFKCNHTLTDHTGYVNTVTISPDGSLCASGGKDTFACLWELSSGKPLYKLEARNTIN ALAFSPNKYWLSAATDDKIIIWDLLTKQVLAEIVPEVKEQAFDSKKKKESKPKAPACLSL AWSADGSVLYAGYNDGLIRVYKSSSQiflkfqkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames)	Frame A: QKAPQVTYLEVGSLVGHNGFVTSIAVSPENPDTIISSSRDKTVMVWQLTPTDATSPGKAH RSLKGHSHFVQDVVISHDGQFALSGSWDNTLRLWDITKGVSTRLFKGHTQDVMSVAFSSD NRQIISGSRDATIKVWNTLGECKFTLEGPEAHQDWVSCIRFSPNTPTIVSGSWDNKVKIW DIKSFKCNHTLTDHTGYVNTVTISPDGSLCASGGKDTFACLWELSSGKPLYKLEARNTIN ALAFSPNKYWLSAATDDKIIIWDLLTKQVLAEIVPEVKEQAFDSKKKKESKPKAPACLSL AWSADGSVLYAGYNDGLIRVYKSSSQiflkfqkkkkkkkkkkkkkk Frame B: kkhhklltksdhlvttvlspllpfhqktqipsfhhhvirllwygnpqlmpphqvkpt dhsrvthtlfkmlsfpttvnspyqvhgiipdygispkvfqpvsskvtlkmlcllpshqt tvksfqvhvmppskfgtpsvnvnslkvqklikigfhvsdshqtpqpsfqvhgitklrsg israsnattpltipvtstlspslqtvhyvplvvkipllvsgnyhlvnhytnklvtpsm lllshqtnigyllplmtkssfgisspnkfslkssqksknklstqrkrknqnqkhqlvsps lgllmvqsymlvtmmvsvftnhhpnkffnnfkkkkkkkkkkkkkkk Frame C: ksttsyllrsriiswsqrfchlycrftrkpryhhfiitdcygmainpnchltrspq itqgsltlcsrcchfprrsirlirfmgylkimgyhqrcfnpslqrshsrcyvccllirq psnhfrftchhqslehprmihfrrsrsssrlgfmyqiltkhpnhrfrfmgqsdlg yqelqmqphlnpyrlrqhchhlsrrfimclwwrylclslgiiiwtiiqirsshhqc scfltkqilvicchqnhhlgsphqtssrnrprsqrtsfrlkekeriktkstslslpr lvcwfslicwlqwfnpclqiiipinflikiskkkkkkkkkkkkkk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SLH295 (SLH295Q) /CSM/SL/SLH2-D/SLH295Q.Seq.d/ 1982 0.0 VFE262 (VFE262Q) /CSM/VF/VFE2-C/VFE262Q.Seq.d/ 1957 0.0 VFJ119 (VFJ119Q) /CSM/VF/VFJ1-A/VFJ119Q.Seq.d/ 1947 0.0 VFD392 (VFD392Q) /CSM/VF/VFD3-D/VFD392Q.Seq.d/ 1943 0.0 VSD317 (VSD317Q) /CSM/VS/VSD3-A/VSD317Q.Seq.d/ 1925 0.0 VFH168 (VFH168Q) /CSM/VF/VFH1-C/VFH168Q.Seq.d/ 1915 0.0 VSD235 (VSD235Q) /CSM/VS/VSD2-B/VSD235Q.Seq.d/ 1907 0.0 VFH267 (VFH267Q) /CSM/VF/VFH2-C/VFH267Q.Seq.d/ 1903 0.0 VFM525 (VFM525Q) /CSM/VF/VFM5-B/VFM525Q.Seq.d/ 1899 0.0 VFN510 (VFN510Q) /CSM/VF/VFN5-A/VFN510Q.Seq.d/ 1863 0.0
own update	2004. 8. 7
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 1953 0.0 1 (BJ430590) Dictyostelium discoideum cDNA clone:ddv7h23, 3' e... 1493 0.0 2 (BJ431031) Dictyostelium discoideum cDNA clone:ddv9k16, 3' e... 1475 0.0 1 (AU034471) Dictyostelium discoideum slug cDNA, clone SLC187. 1417 0.0 1 (BJ432559) Dictyostelium discoideum cDNA clone:ddv19e05, 3' ... 1409 0.0 1 (AU284331) Dictyostelium discoideum gamete cDNA clone:FC-AM0... 1370 0.0 1 (C25563) Dictyostelium discoideum slug cDNA, clone SLA422. 1350 0.0 3 (AU034785) Dictyostelium discoideum slug cDNA, clone SLE327. 1296 0.0 1 (BJ431790) Dictyostelium discoideum cDNA clone:ddv15g17, 3' ... 1289 0.0 1 (AU284954) Dictyostelium discoideum gamete cDNA clone:FC-BR0... 1285 0.0 1
dna update	2009. 5.20
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value U27537_1(U27537\|pid:none) Dictyostelium discoideum G beta like p... 608 e-173 (Q25189) RecName: Full=Guanine nucleotide-binding protein subuni... 375 e-102 U77381_1(U77381\|pid:none) Arabidopsis thaliana WD-40 repeat prot... 373 e-102 AC073555_19(AC073555\|pid:none) Arabidopsis thaliana chromosome 1... 371 e-101 AY159316_1(AY159316\|pid:none) Homo sapiens lung cancer oncogene ... 371 e-101 EU906910_1(EU906910\|pid:none) Phaseolus vulgaris Rack (RACK) mRN... 371 e-101 (P63243) RecName: Full=Guanine nucleotide-binding protein subuni... 371 e-101 BT043532_1(BT043532\|pid:none) Salmo salar clone HM4_1707 guanine... 370 e-101 BC102286_1(BC102286\|pid:none) Bos taurus guanine nucleotide bind... 369 e-101 AK222488_1(AK222488\|pid:none) Homo sapiens mRNA for guanine nucl... 369 e-101
protein update	2009. 7. 5
PSORT	psg: 0.92 gvh: 0.42 alm: 0.40 top: 0.37 tms: 0.00 mit: 0.19 mip: 0.00 nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: cytoplasmic 32.0 %: nuclear 16.0 %: cytoskeletal 4.0 %: vacuolar 4.0 %: endoplasmic reticulum >> prediction for SLH295 is cyt
5' end seq. ID	SLH295F
5' end seq.	>SLH295F.Seq CAAAAAGCACCACAAGTTACTTACTTAGAAGTCGGATCATTAGTTGGTCACAACGGTTTT GTCACCTCTATTGCCGTTTCACCAGAAAACCCAGATACCATCATTTCATCATCACGTGAT AAGACTGTTATGGTATGGCAATTAACCCCAACTGATGCCACCTCACCAGGTAAAGCCCAC AGATCACTCAAGGGTCACTCACACTTTGTTCAAGATGTTGTCATTTCCCACGACGGTCAA TTCGCCTTATCAGGTTCATGGGATAATACCTTAAGATTATGGGATATCACCAAAGGTGTT TCAACCCGTCTCTTCAAAGGTCACACTCAAGATGTTATGTCTGTTGCCTTCTCATCAGAC AACCGTCAAATCATTTCAGGTTCACGTGATGCCACCATCAAAGTTTGGAACACCCTCGGT GAATGTAAATTCACTTTAGAAGGTCCAGAAGCTCATCAAGATTGGGTTTCATGTATCAGA TTCTCACCAAACACCCCAACCATCGTTTCAGGTTCATGGGATAACAAAGTTAAGATCTGG GATATCAAGAGCTTCAAATGCAACCACACCTTAACTGACCATACCGGTTACGTCAACACT GTCACCATCTCTCCAGACGGTTCATTATGTGCCTCTGGTGGTAA----------
Length of 5' end seq.	644
3' end seq. ID	SLH295Z
3' end seq.	>SLH295Z.Seq ----------CCTCGGTGAATGTAAATTCACTTTAGAAGGTCCAGAAGCTCATCAAGATT GGGTTTCATGTATCAGATTCTCACCAAACACCCCAACCATCGTTTCAGGTTCATGGGATA ACAAAGTTAAGATCTGGGATATCAAGAGCTTCAAATGCAACCACACCTTAACTGACCATA CCGGTTACGTCAACACTGTCACCATCTCTCCAGACGGTTCATTATGTGCCTCTGGTGGTA AAGATACCTTTGCTTGTCTCTGGGAATTATCATCTGGTAAACCATTATACAAATTAGAAG CTCGTAACACCATCAATGCTCTTGCTTTCTCACCAAACAAATATTGGTTATCTGCTGCCA CTGATGACAAAATCATCATTTGGGATCTCCTCACCAAACAAGTTCTCGCTGAAATCGTCC CAGAAGTCAAAGAACAAGCTTTCGACTCAAAGAAAAAGAAAGAATCAAAACCAAAAGCAC CAGCTTGTCTCTCCCTCGCTTGGTCTGCTGATGGTTCAGTCTTATATGCTGGTTACAATG ATGGTTTAATCCGTGTTTACAAATCATCATCCCAATAAATTTTTTAATTAAAATTTCAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq.	632
Connected seq. ID	SLH295P
Connected seq.	>SLH295P.Seq CAAAAAGCACCACAAGTTACTTACTTAGAAGTCGGATCATTAGTTGGTCACAACGGTTTT GTCACCTCTATTGCCGTTTCACCAGAAAACCCAGATACCATCATTTCATCATCACGTGAT AAGACTGTTATGGTATGGCAATTAACCCCAACTGATGCCACCTCACCAGGTAAAGCCCAC AGATCACTCAAGGGTCACTCACACTTTGTTCAAGATGTTGTCATTTCCCACGACGGTCAA TTCGCCTTATCAGGTTCATGGGATAATACCTTAAGATTATGGGATATCACCAAAGGTGTT TCAACCCGTCTCTTCAAAGGTCACACTCAAGATGTTATGTCTGTTGCCTTCTCATCAGAC AACCGTCAAATCATTTCAGGTTCACGTGATGCCACCATCAAAGTTTGGAACACCCTCGGT GAATGTAAATTCACTTTAGAAGGTCCAGAAGCTCATCAAGATTGGGTTTCATGTATCAGA TTCTCACCAAACACCCCAACCATCGTTTCAGGTTCATGGGATAACAAAGTTAAGATCTGG GATATCAAGAGCTTCAAATGCAACCACACCTTAACTGACCATACCGGTTACGTCAACACT GTCACCATCTCTCCAGACGGTTCATTATGTGCCTCTGGTGGTAA----------CCTCGG TGAATGTAAATTCACTTTAGAAGGTCCAGAAGCTCATCAAGATTGGGTTTCATGTATCAG ATTCTCACCAAACACCCCAACCATCGTTTCAGGTTCATGGGATAACAAAGTTAAGATCTG GGATATCAAGAGCTTCAAATGCAACCACACCTTAACTGACCATACCGGTTACGTCAACAC TGTCACCATCTCTCCAGACGGTTCATTATGTGCCTCTGGTGGTAAAGATACCTTTGCTTG TCTCTGGGAATTATCATCTGGTAAACCATTATACAAATTAGAAGCTCGTAACACCATCAA TGCTCTTGCTTTCTCACCAAACAAATATTGGTTATCTGCTGCCACTGATGACAAAATCAT CATTTGGGATCTCCTCACCAAACAAGTTCTCGCTGAAATCGTCCCAGAAGTCAAAGAACA AGCTTTCGACTCAAAGAAAAAGAAAGAATCAAAACCAAAAGCACCAGCTTGTCTCTCCCT CGCTTGGTCTGCTGATGGTTCAGTCTTATATGCTGGTTACAATGATGGTTTAATCCGTGT TTACAAATCATCATCCCAATAAATTTTTTAATTAAAATTTCAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq.	1276
Full length Seq ID	SLH295E
Full length Seq.	>SLH295E.Seq CAAAAAGCACCACAAGTTACTTACTTAGAAGTCGGATCATTAGTTGGTCACAACGGTTTT GTCACCTCTATTGCCGTTTCACCAGAAAACCCAGATACCATCATTTCATCATCACGTGAT AAGACTGTTATGGTATGGCAATTAACCCCAACTGATGCCACCTCACCAGGTAAAGCCCAC AGATCACTCAAGGGTCACTCACACTTTGTTCAAGATGTTGTCATTTCCCACGACGGTCAA TTCGCCTTATCAGGTTCATGGGATAATACCTTAAGATTATGGGATATCACCAAAGGTGTT TCAACCCGTCTCTTCAAAGGTCACACTCAAGATGTTATGTCTGTTGCCTTCTCATCAGAC AACCGTCAAATCATTTCAGGTTCACGTGATGCCACCATCAAAGTTTGGAACACCCTCGGT GAATGTAAATTCACTTTAGAAGGTCCAGAAGCTCATCAAGATTGGGTTTCATGTATCAGA TTCTCACCAAACACCCCAACCATCGTTTCAGGTTCATGGGATAACAAAGTTAAGATCTGG GATATCAAGAGCTTCAAATGCAACCACACCTTAACTGACCATACCGGTTACGTCAACACT GTCACCATCTCTCCAGACGGTTCATTATGTGCCTCTGGTGGTAAAGATACCTTTGCTTGT CTCTGGGAATTATCATCTGGTAAACCATTATACAAATTAGAAGCTCGTAACACCATCAAT GCTCTTGCTTTCTCACCAAACAAATATTGGTTATCTGCTGCCACTGATGACAAAATCATC ATTTGGGATCTCCTCACCAAACAAGTTCTCGCTGAAATCGTCCCAGAAGTCAAAGAACAA GCTTTCGACTCAAAGAAAAAGAAAGAATCAAAACCAAAAGCACCAGCTTGTCTCTCCCTC GCTTGGTCTGCTGATGGTTCAGTCTTATATGCTGGTTACAATGATGGTTTAATCCGTGTT TACAAATCATCATCCCAATAAATTTTTTAATTAAAATTTCAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq.	1045

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas