SLH294
Library SL
(Link to library)
Clone ID SLH294
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16466-1
Original site URL
Representative seq. ID SLH294E
(Link to Original site)
Representative DNA sequence
>SLH294 (SLH294Q) /CSM/SL/SLH2-D/SLH294Q.Seq.d/
CGATAAGAAAACAGCTATCGTTGGTTTCATTGCTGCTTCAGCCGCTAAAGATTGGGCTGA
AAAATCACCAGAAGAAAGAAAGAGAGCCGTCTTAGACTGTTATGCTCGTTGGTGGGGTCC
AAAAGCATTATCTCCAAGAATCTTTTTAGAGAAAAGTTGGAAAGAAGAAGAATATTCACG
TGGTTGTTATTTAGGTTACACTAGTCCAGGTACTCTCTACCAATGTGGTGAACATTTACG
TGCTCCAGTTGGTAGAATTCATTGGGCTGGTACAGAAACTGCTTCAGTTTGGATTGGTTA
TATGGAAGGTGCCTTAGAATCAGGTTTTAGAGTTTCAAAAGAAATTAAAGATAAATTATT
AAATTCAAAATTATAAATAAATAAATAAATAAT
sequence update 1998. 7. 2
Translated Amino Acid sequence
DKKTAIVGFIAASAAKDWAEKSPEERKRAVLDCYARWWGPKALSPRIFLEKSWKEEEYSR
GCYLGYTSPGTLYQCGEHLRAPVGRIHWAGTETASVWIGYMEGALESGFRVSKEIKDKLL
NSKL*ink*i


Translated Amino Acid sequence (All Frames)
Frame A:
r*ensyrwfhccfsr*rlg*kitrrkkesrlrllcslvgsksiisknlfreklerrrift
wllfrlh*sryslpmw*tftcssw*nslgwyrncfsldwlygrclrirf*sfkrn*r*ii
kfkiink*inn


Frame B:
DKKTAIVGFIAASAAKDWAEKSPEERKRAVLDCYARWWGPKALSPRIFLEKSWKEEEYSR
GCYLGYTSPGTLYQCGEHLRAPVGRIHWAGTETASVWIGYMEGALESGFRVSKEIKDKLL
NSKL*ink*i


Frame C:
irkqlslvslllqplkiglknhqkkereps*tvmlvggvqkhylqesf*rkvgkkknihv
vvi*vtlvqvlstnvvniyvlqlvefiglvqkllqfglviwkvp*nqvlefqkklkiny*
iqnyk*ink*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFN480 (VFN480Q) /CSM/VF/VFN4-D/VFN480Q.Seq.d/ 666 0.0
VFM824 (VFM824Q) /CSM/VF/VFM8-A/VFM824Q.Seq.d/ 666 0.0
VFH733 (VFH733Q) /CSM/VF/VFH7-B/VFH733Q.Seq.d/ 666 0.0
VFH616 (VFH616Q) /CSM/VF/VFH6-A/VFH616Q.Seq.d/ 666 0.0
VFG414 (VFG414Q) /CSM/VF/VFG4-A/VFG414Q.Seq.d/ 666 0.0
VFG364 (VFG364Q) /CSM/VF/VFG3-C/VFG364Q.Seq.d/ 666 0.0
VFE309 (VFE309Q) /CSM/VF/VFE3-A/VFE309Q.Seq.d/ 666 0.0
VFC772 (VFC772Q) /CSM/VF/VFC7-C/VFC772Q.Seq.d/ 666 0.0
VFB888 (VFB888Q) /CSM/VF/VFB8-D/VFB888Q.Seq.d/ 666 0.0
VFA759 (VFA759Q) /CSM/VF/VFA7-C/VFA759Q.Seq.d/ 666 0.0

own update 2001.11.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU052223) Dictyostelium discoideum slug cDNA, clone SLA273. 666 0.0 1
(AU039258) Dictyostelium discoideum slug cDNA, clone SLH294. 666 0.0 1
(AU034499) Dictyostelium discoideum slug cDNA, clone SLC349. 666 0.0 1
(AU034174) Dictyostelium discoideum slug cDNA, clone SLC142. 666 0.0 1
(C22948) Dictyostelium discoideum gamete cDNA, clone FC-AC12. 666 0.0 1
(BJ435702) Dictyostelium discoideum cDNA clone:ddv27p20, 3' ... 666 0.0 1
(BJ435141) Dictyostelium discoideum cDNA clone:ddv26p06, 3' ... 666 0.0 1
(BJ434223) Dictyostelium discoideum cDNA clone:ddv16b09, 3' ... 666 0.0 1
(BJ434208) Dictyostelium discoideum cDNA clone:ddv16o04, 3' ... 666 0.0 1
(BJ431313) Dictyostelium discoideum cDNA clone:ddv13p15, 3' ... 666 0.0 1
dna update 2009. 5.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AP006618_3091(AP006618|pid:none) Nocardia farcinica IFM 10152 DN... 113 2e-24
(Q6PLK3) RecName: Full=Amine oxidase [flavin-containing] B; ... 112 5e-24
AY185211_1(AY185211|pid:none) Danio rerio monoamine oxidase mRNA... 111 9e-24
(Q6NSN2) RecName: Full=Amine oxidase [flavin-containing]; ... 111 9e-24
AF217955_1(AF217955|pid:none) Bos taurus monoamine oxidase B mRN... 110 2e-23
(P56560) RecName: Full=Amine oxidase [flavin-containing] B; ... 110 2e-23
I51346(I51346) monoamine oxidase - rainbow trout &L37878_1(L378... 108 8e-23
BC084428_1(BC084428|pid:none) Xenopus laevis hypothetical LOC495... 107 2e-22
(Q7YRB7) RecName: Full=Amine oxidase [flavin-containing] B; ... 106 2e-22
AB047270_1(AB047270|pid:none) Cavia porcellus MAO-A mRNA for put... 106 3e-22
protein update 2009. 7. 5
PSORT

psg: 0.94 gvh: 0.49 alm: 0.48 top: 0.47 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 1.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
32.0 %: peroxisomal
20.0 %: mitochondrial
12.0 %: nuclear
4.0 %: cytoskeletal

>> prediction for SLH294 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLH294E
Full length Seq.
>SLH294E.Seq
CGATAAGAAAACAGCTATCGTTGGTTTCATTGCTGCTTCAGCCGCTAAAGATTGGGCTGA
AAAATCACCAGAAGAAAGAAAGAGAGCCGTCTTAGACTGTTATGCTCGTTGGTGGGGTCC
AAAAGCATTATCTCCAAGAATCTTTTTAGAGAAAAGTTGGAAAGAAGAAGAATATTCACG
TGGTTGTTATTTAGGTTACACTAGTCCAGGTACTCTCTACCAATGTGGTGAACATTTACG
TGCTCCAGTTGGTAGAATTCATTGGGCTGGTACAGAAACTGCTTCAGTTTGGATTGGTTA
TATGGAAGGTGCCTTAGAATCAGGTTTTAGAGTTTCAAAAGAAATTAAAGATAAATTATT
AAATTCAAAATTATAAATAAATAAATAAATAAT
Length of full length seq. 393