SLH292
Library SL
(Link to library)
Clone ID SLH292
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15046-1
Original site URL
Representative seq. ID SLH292P
(Link to Original site)
Representative DNA sequence
>SLH292 (SLH292Q) /CSM/SL/SLH2-D/SLH292Q.Seq.d/
ATTTTCTATACAAATAAAAAAAAAAAAAAAAAAAAAAAATAAAAATAAAAATAAAAATAA
AAATTTAATTAATTAATTGAATCTATCCANTTCAAAAAAATTAAAAAATAAATTAATTTA
TTCTGTAATATAAAAATAAAGATTTTTTTTATTTTTTTAATATTAAAAATGAAATTAAAT
AATTCATTTTTTTTTATGTCGGTAATATTTGTATTTTTAATAATAATACAATTTTCAACT
GCAACATATTCAAAATCAGAAATTGAATATTATAAAAGATTTGGATATAATTTGGAAACT
GGAGAATATACTCGGTCTTCACCACACCAACACCAACAACAATATCAACAACAACCACAA
TCACGTCAACGTAATAGACACAATAGTCGTTATGGTAGTGAAAGAAGATCAAGACAAAAT
CCATATAATGAXXXXXXXXXXCCAAATATTGATGACGAAGACCATGATGAAGATGATGAT
GAACCAGAAGAAACTGAAGAACCAACAATTACAGGTTCTATTGAAGAAGCTAAAACACCA
GATCCAAATCTTATTGAAGGATATTCTAGTGAAAGTGATCCTAGTGGGAGTCAATCAACC
CATGAAGATAATTTAATAGCTACTCAATCAAATTCAAGTGGTAAAATTTCAATAACCTTT
TTTTCTTTTATTATCTTTTCTTTTACAATTGTTTTTTTTTTAATTTAATTTAAATAAAAT
TTTTCTTTAAATTATTGTTGAATAAAAA
sequence update 1999. 2. 9
Translated Amino Acid sequence
ifytnkkkkkkkk*k*k*k*kfn*liesixfkkikk*INLFCNIKIKIFFIFLILKMKLN
NSFFFMSVIFVFLIIIQFSTATYSKSEIEYYKRFGYNLETGEYTRSSPHQHQQQYQQQPQ
SRQRNRHNSRYGSERRSRQNPYN---

---PNIDDEDHDEDDDEPEETEEPTITGSIEEAKTPDPNLIEGYSSESDPSGSQSTHEDN
LIATQSNSSGKISITFFSFIIFSFTIVFFLI*fk*nfslnyc*ik


Translated Amino Acid sequence (All Frames)
Frame A:
ifytnkkkkkkkk*k*k*k*kfn*liesixfkkikk*INLFCNIKIKIFFIFLILKMKLN
NSFFFMSVIFVFLIIIQFSTATYSKSEIEYYKRFGYNLETGEYTRSSPHQHQQQYQQQPQ
SRQRNRHNSRYGSERRSRQNPYN---

---PNIDDEDHDEDDDEPEETEEPTITGSIEEAKTPDPNLIEGYSSESDPSGSQSTHEDN
LIATQSNSSGKISITFFSFIIFSFTIVFFLI*fk*nfslnyc*ik

Frame B:
fsiqikkkkkkknknknknknlin*lnlsxskklknkliysvi*k*rfflff*y*k*n*i
ihfflcr*ylyf***ynfqlqhiqnqklniikdldiiwklenilglhhtntnnninnnhn
hvnvidtivvmvvkedqdkihim---

---qilmtktmmkmmmnqkklknqqlqvllkklkhqiqillkdilvkvilvgvnqpmkii
**llnqiqvvkfq*pfflllsfllqlfff*fnlnkifl*iive*k

Frame C:
flyk*kkkkkkkikikikiki*lin*iypxqkn*kin*fil*yknkdffyffnikneik*
fiffyvgnicifnnntifncnifkirn*il*kiwi*fgnwriysvfttptpttistttti
tst**tq*slw**kkiktksi**---

---ky**rrp**r***trrn*rtnnyrfy*rs*ntrsksy*rif**k*s*wesinp*r*f
nsysikfkw*nfnnlfffyylffyncfffnli*ikfffklllnk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLH292 (SLH292Q) /CSM/SL/SLH2-D/SLH292Q.Seq.d/ 507 e-143
SFI214 (SFI214Q) /CSM/SF/SFI2-A/SFI214Q.Seq.d/ 418 e-116
CFA525 (CFA525Q) /CSM/CF/CFA5-B/CFA525Q.Seq.d/ 325 6e-88
CHK236 (CHK236Q) /CSM/CH/CHK2-B/CHK236Q.Seq.d/ 321 9e-87
CFD787 (CFD787Q) /CSM/CF/CFD7-D/CFD787Q.Seq.d/ 264 2e-69
SLD846 (SLD846Q) /CSM/SL/SLD8-B/SLD846Q.Seq.d/ 192 5e-48
CFG450 (CFG450Q) /CSM/CF/CFG4-C/CFG450Q.Seq.d/ 163 5e-39
SHB412 (SHB412Q) /CSM/SH/SHB4-A/SHB412Q.Seq.d/ 50 5e-05
VHH496 (VHH496Q) /CSM/VH/VHH4-D/VHH496Q.Seq.d/ 44 0.003
VHC744 (VHC744Q) /CSM/VH/VHC7-B/VHC744Q.Seq.d/ 44 0.003

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU039257) Dictyostelium discoideum slug cDNA, clone SLH292. 426 e-115 1
(BJ402500) Dictyostelium discoideum cDNA clone:dds17k04, 3' ... 418 e-112 1
(AU062034) Dictyostelium discoideum slug cDNA, clone SLH292. 244 5e-93 4
(BJ360986) Dictyostelium discoideum cDNA clone:ddc8n21, 5' e... 244 3e-90 3
(BJ373216) Dictyostelium discoideum cDNA clone:ddc2a07, 3' e... 325 1e-84 1
(BJ389015) Dictyostelium discoideum cDNA clone:dds17k04, 5' ... 127 7e-84 4
(BJ381683) Dictyostelium discoideum cDNA clone:ddc42g10, 3' ... 321 2e-83 1
(AU061363) Dictyostelium discoideum slug cDNA, clone SLD846. 172 2e-49 2
(BJ372645) Dictyostelium discoideum cDNA clone:ddc13d14, 3' ... 163 1e-35 1
(EK397674) 1095469527024 Global-Ocean-Sampling_GS-31-01-01-1... 60 1e-04 1
dna update 2009. 5.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54QR5) RecName: Full=Uncharacterized transmembrane protein DDB... 106 7e-22

protein update 2009. 1.24
PSORT

psg: 1.02 gvh: 0.64 alm: 0.20 top: 0.60 tms: 0.20 mit: 0.35 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

28.0 %: endoplasmic reticulum
24.0 %: plasma membrane
12.0 %: nuclear
12.0 %: mitochondrial
12.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: cytoplasmic

>> prediction for SLH292 is end

5' end seq. ID SLH292F
5' end seq.
>SLH292F.Seq
ATTTTCTATACAAATAAAAAAAAAAAAAAAAAAAAAAAATAAAAATAAAAATAAAAATAA
AAATTTAATTAATTAATTGAATCTATCCANTTCAAAAAAATTAAAAAATAAATTAATTTA
TTCTGTAATATAAAAATAAAGATTTTTTTTATTTTTTTAATATTAAAAATGAAATTAAAT
AATTCATTTTTTTTTATGTCGGTAATATTTGTATTTTTAATAATAATACAATTTTCAACT
GCAACATATTCAAAATCAGAAATTGAATATTATAAAAGATTTGGATATAATTTGGAAACT
GGAGAATATACTCGGTCTTCACCACACCAACACCAACAACAATATCAACAACAACCACAA
TCACGTCAACGTAATAGACACAATAGTCGTTATGGTAGTGAAAGAAGATCAAGACAAAAT
CCATATAATGA----------
Length of 5' end seq. 431
3' end seq. ID SLH292Z
3' end seq.
>SLH292Z.Seq
----------CCAAATATTGATGACGAAGACCATGATGAAGATGATGATGAACCAGAAGA
AACTGAAGAACCAACAATTACAGGTTCTATTGAAGAAGCTAAAACACCAGATCCAAATCT
TATTGAAGGATATTCTAGTGAAAGTGATCCTAGTGGGAGTCAATCAACCCATGAAGATAA
TTTAATAGCTACTCAATCAAATTCAAGTGGTAAAATTTCAATAACCTTTTTTTCTTTTAT
TATCTTTTCTTTTACAATTGTTTTTTTTTTAATTTAATTTAAATAAAATTTTTCTTTAAA
TTATTGTTGAATAAAAA
Length of 3' end seq. 307
Connected seq. ID SLH292P
Connected seq.
>SLH292P.Seq
ATTTTCTATACAAATAAAAAAAAAAAAAAAAAAAAAAAATAAAAATAAAAATAAAAATAA
AAATTTAATTAATTAATTGAATCTATCCANTTCAAAAAAATTAAAAAATAAATTAATTTA
TTCTGTAATATAAAAATAAAGATTTTTTTTATTTTTTTAATATTAAAAATGAAATTAAAT
AATTCATTTTTTTTTATGTCGGTAATATTTGTATTTTTAATAATAATACAATTTTCAACT
GCAACATATTCAAAATCAGAAATTGAATATTATAAAAGATTTGGATATAATTTGGAAACT
GGAGAATATACTCGGTCTTCACCACACCAACACCAACAACAATATCAACAACAACCACAA
TCACGTCAACGTAATAGACACAATAGTCGTTATGGTAGTGAAAGAAGATCAAGACAAAAT
CCATATAATGA----------CCAAATATTGATGACGAAGACCATGATGAAGATGATGAT
GAACCAGAAGAAACTGAAGAACCAACAATTACAGGTTCTATTGAAGAAGCTAAAACACCA
GATCCAAATCTTATTGAAGGATATTCTAGTGAAAGTGATCCTAGTGGGAGTCAATCAACC
CATGAAGATAATTTAATAGCTACTCAATCAAATTCAAGTGGTAAAATTTCAATAACCTTT
TTTTCTTTTATTATCTTTTCTTTTACAATTGTTTTTTTTTTAATTTAATTTAAATAAAAT
TTTTCTTTAAATTATTGTTGAATAAAAA
Length of connected seq. 738
Full length Seq ID -
Full length Seq. -
Length of full length seq. -