SLH288
Library SL
(Link to library)
Clone ID SLH288
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16287-1
Original site URL
Representative seq. ID SLH288P
(Link to Original site)
Representative DNA sequence
>SLH288 (SLH288Q) /CSM/SL/SLH2-D/SLH288Q.Seq.d/
AAAAAAAATAAAAAATGTCACTTCATCATGTCAAAACAAATAAATATAAAGGTTTTTATG
ATTCTTATGCATCACCACCTGCAACAAAAGAAATTTCAAAATATTCTTTAAAAGAAGAGT
CAAATAAACCAGAAGTTATTAGAGATTTAATAATTGATGAATTATTATTAGATGGTAATG
CAAAACAAAACTTGGCCACATTTTGTCAAACTGATCTTGATAAAGAGATTCATGTATTAA
TGGATAAATGTATTGACAAGAATATGATTGACAAGGATGAATATCCACAAACTGCTGAAA
TTGAAAGTCGTTGTGTTCATATTTTAGCGGATTTGTGGAATTCACCAGAAAGTTCTGAAA
CTATTGGTTGTTCAACTACTGGATCTAGTGAAGCTGCAATGTTGGGTGGAATGGCTTTGA
AATGGAGATGGAGAGAAAATAGAAAGAAACAAGGTAAACCATTTGATAAACCAAACATTG
TAACTGGTCCAGTTCAAATTTGTTGGCATAAGTTTGCACTATACTTTGATATTGAATTAA
GAGAAGTACCAATGGAACATGACCGTTACATAATGACACCAGAGGAAGCCATAAXXXXXX
XXXXGGATTTTAGACTACCACGTGTTAAATCAATTAATGGCTCTGGTCATAAATTTGGTC
TATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAAAATGACATTCACAAGGATT
TGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAACATTTTCATTGAATTTCTCAC
GTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCGCCATGGTCGTAGTGGAT
ATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTCATTTCCAAGCAAGTTAAAA
AACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTCCAGGTGCATGTTGGA
AATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGACCTTTCAGATAGAATGAGAA
ATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTACCAGATATTGTAGTTCAAA
GAGTATTAATTAGACATGGTTTCAGTCATGATATGGCAATGCTCTTAATTGAAGATTTCA
ATCGTAGTATTGAATATTTTGATAAACATCCAATGGTTCAAAGTATTTCAAAAGATGAAG
GTCAATCATTCCATCATTAAAATTAAAAAAAAAAAAATAAAAAAAAAAGCATCAATAATT
AATAATTAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1999. 2. 9
Translated Amino Acid sequence
kk*KMSLHHVKTNKYKGFYDSYASPPATKEISKYSLKEESNKPEVIRDLIIDELLLDGNA
KQNLATFCQTDLDKEIHVLMDKCIDKNMIDKDEYPQTAEIESRCVHILADLWNSPESSET
IGCSTTGSSEAAMLGGMALKWRWRENRKKQGKPFDKPNIVTGPVQICWHKFALYFDIELR
EVPMEHDRYIMTPEEAI---

---DFRLPRVKSINGSGHKFGLSPLGVGWVVWRGKNDIHKDLVFDVNYLGGNMPTFSLNF
SRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFISKQVKKHGIFDIVYDGTGALPGAC
WKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLPNLPDIVVQRVLIRHGFSHDMAMLLIED
FNRSIEYFDKHPMVQSISKDEGQSFHH*n*kkknkkksinn**lkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
kknkkchfimskqinikvfmilmhhhlqqkkfqnil*kksqinqkllei**lmnyy*mvm
qnktwphfvklilikrfmy*winvltri*ltrmnihkllklkvvvfif*ricgihqkvlk
llvvqlldlvklqcwvewl*ngdgekiernkvnhlinqtl*lvqfkfvgislhytliln*
ekyqwnmtvt**hqrkp*---

---gf*tttc*in*wlws*iwsisigswlgrmer*k*hsqgfgircqlswwqyanifief
ltsrwsnsmpvl*lfapws*wiyrsssslsrswyfhfqas*ktryf*ycl*wywctsrcm
leiekrckskiqsl*pfr*nek*rlancilystkltrycssksin*twfqs*ygnaln*r
fqs*y*if**tsngskyfkr*rsiipslklkkkk*kkkhq*liikkkkkkkk

Frame B:
kkiknvtsscqnk*i*rfl*flcittcnkrnfkiffkrrvk*trsy*rfnn**iiirw*c
ktklghilsn*s**rdscing*my*qeyd*qg*istnc*n*kslcsyfsgfveftrkf*n
ywlfnywi**scnvgwngfememerk*ketr*ti**tkhcnwsssnlla*vctil*y*ik
rstngt*plhndtrgsh---

---DFRLPRVKSINGSGHKFGLSPLGVGWVVWRGKNDIHKDLVFDVNYLGGNMPTFSLNF
SRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFISKQVKKHGIFDIVYDGTGALPGAC
WKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLPNLPDIVVQRVLIRHGFSHDMAMLLIED
FNRSIEYFDKHPMVQSISKDEGQSFHH*n*kkknkkksinn**lkkkkkkkk

Frame C:
kk*KMSLHHVKTNKYKGFYDSYASPPATKEISKYSLKEESNKPEVIRDLIIDELLLDGNA
KQNLATFCQTDLDKEIHVLMDKCIDKNMIDKDEYPQTAEIESRCVHILADLWNSPESSET
IGCSTTGSSEAAMLGGMALKWRWRENRKKQGKPFDKPNIVTGPVQICWHKFALYFDIELR
EVPMEHDRYIMTPEEAI---

---ildyhvlnqlmalvinlvylhwelagsygevkmtftriwysmstilvaicqhfh*is
hvqvvk*yastitfcamvvvdipqfiklv*imvfsfpsklkntvflilfmmvlvhfqvhv
gn*kkmqk*nsisltfqie*eievgklhpilyqtyqil*fkey*ldmvsvmiwqcs*lki
sivvlniliniqwfkvfqkmkvnhsiikikkkkikkkasiinn*kkkkkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLH288 (SLH288Q) /CSM/SL/SLH2-D/SLH288Q.Seq.d/ 2337 0.0
SSE705 (SSE705Q) /CSM/SS/SSE7-A/SSE705Q.Seq.d/ 1229 0.0
SLB722 (SLB722Q) /CSM/SL/SLB7-A/SLB722Q.Seq.d/ 1229 0.0
SSF349 (SSF349Q) /CSM/SS/SSF3-C/SSF349Q.Seq.d/ 1221 0.0
SLB349 (SLB349Q) /CSM/SL/SLB3-C/SLB349Q.Seq.d/ 1221 0.0
SSF452 (SSF452Q) /CSM/SS/SSF4-C/SSF452Q.Seq.d/ 1219 0.0
SFJ443 (SFJ443Q) /CSM/SF/SFJ4-B/SFJ443Q.Seq.d/ 1197 0.0
SFG506 (SFG506Q) /CSM/SF/SFG5-A/SFG506Q.Seq.d/ 1193 0.0
CHC349 (CHC349Q) /CSM/CH/CHC3-C/CHC349Q.Seq.d/ 1193 0.0
SFD334 (SFD334Q) /CSM/SF/SFD3-B/SFD334Q.Seq.d/ 1191 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU039255) Dictyostelium discoideum slug cDNA, clone SLH288. 1213 0.0 1
(AU034007) Dictyostelium discoideum slug cDNA, clone SLB722. 1213 0.0 1
(C84710) Dictyostelium discoideum slug cDNA, clone SSE705. 1213 0.0 1
(C92830) Dictyostelium discoideum slug cDNA, clone SSF452. 1207 0.0 1
(AU033714) Dictyostelium discoideum slug cDNA, clone SLB349. 1205 0.0 1
(C92791) Dictyostelium discoideum slug cDNA, clone SSF349. 1205 0.0 1
(BJ401761) Dictyostelium discoideum cDNA clone:dds19f12, 3' ... 1170 0.0 2
(AU051981) Dictyostelium discoideum slug cDNA, clone SSC841. 1158 0.0 1
(AU062033) Dictyostelium discoideum slug cDNA, clone SLH288. 1148 0.0 1
(BJ390893) Dictyostelium discoideum cDNA clone:dds14k01, 5' ... 1148 0.0 1
dna update 2009. 5.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM167904_2795(AM167904|pid:none) Bordetella avium 197N complete ... 325 2e-87
CP001071_364(CP001071|pid:none) Akkermansia muciniphila ATCC BAA... 313 8e-84
AY078505_1(AY078505|pid:none) Edwardsiella tarda glutamate decar... 300 6e-80
CP000474_3810(CP000474|pid:none) Arthrobacter aurescens TC1, com... 298 2e-79
CP000803_1966(CP000803|pid:none) Francisella tularensis subsp. h... 292 2e-77
FM178379_1197(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 281 3e-74
CP000789_2953(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch... 281 5e-74
AM412317_1904(AM412317|pid:none) Clostridium botulinum A str. AT... 278 2e-73
CP000020_1061(CP000020|pid:none) Vibrio fischeri ES114 chromosom... 276 1e-72
CP001358_45(CP001358|pid:none) Desulfovibrio desulfuricans subsp... 271 5e-71
protein update 2009. 6. 4
PSORT

psg: 0.60 gvh: 0.39 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for SLH288 is nuc

5' end seq. ID SLH288F
5' end seq.
>SLH288F.Seq
AAAAAAAATAAAAAATGTCACTTCATCATGTCAAAACAAATAAATATAAAGGTTTTTATG
ATTCTTATGCATCACCACCTGCAACAAAAGAAATTTCAAAATATTCTTTAAAAGAAGAGT
CAAATAAACCAGAAGTTATTAGAGATTTAATAATTGATGAATTATTATTAGATGGTAATG
CAAAACAAAACTTGGCCACATTTTGTCAAACTGATCTTGATAAAGAGATTCATGTATTAA
TGGATAAATGTATTGACAAGAATATGATTGACAAGGATGAATATCCACAAACTGCTGAAA
TTGAAAGTCGTTGTGTTCATATTTTAGCGGATTTGTGGAATTCACCAGAAAGTTCTGAAA
CTATTGGTTGTTCAACTACTGGATCTAGTGAAGCTGCAATGTTGGGTGGAATGGCTTTGA
AATGGAGATGGAGAGAAAATAGAAAGAAACAAGGTAAACCATTTGATAAACCAAACATTG
TAACTGGTCCAGTTCAAATTTGTTGGCATAAGTTTGCACTATACTTTGATATTGAATTAA
GAGAAGTACCAATGGAACATGACCGTTACATAATGACACCAGAGGAAGCCATAA------
----
Length of 5' end seq. 594
3' end seq. ID SLH288Z
3' end seq.
>SLH288Z.Seq
----------GGATTTTAGACTACCACGTGTTAAATCAATTAATGGCTCTGGTCATAAAT
TTGGTCTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAAAATGACATTCACA
AGGATTTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAACATTTTCATTGAATT
TCTCACGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCGCCATGGTCGTA
GTGGATATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTCATTTCCAAGCAAG
TTAAAAAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTCCAGGTGCAT
GTTGGAAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGACCTTTCAGATAGAA
TGAGAAATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTACCAGATATTGTAG
TTCAAAGAGTATTAATTAGACATGGTTTCAGTCATGATATGGCAATGCTCTTAATTGAAG
ATTTCAATCGTAGTATTGAATATTTTGATAAACATCCAATGGTTCAAAGTATTTCAAAAG
ATGAAGGTCAATCATTCCATCATTAAAATTAAAAAAAAAAAAATAAAAAAAAAAGCATCA
ATAATTAATAATTAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 688
Connected seq. ID SLH288P
Connected seq.
>SLH288P.Seq
AAAAAAAATAAAAAATGTCACTTCATCATGTCAAAACAAATAAATATAAAGGTTTTTATG
ATTCTTATGCATCACCACCTGCAACAAAAGAAATTTCAAAATATTCTTTAAAAGAAGAGT
CAAATAAACCAGAAGTTATTAGAGATTTAATAATTGATGAATTATTATTAGATGGTAATG
CAAAACAAAACTTGGCCACATTTTGTCAAACTGATCTTGATAAAGAGATTCATGTATTAA
TGGATAAATGTATTGACAAGAATATGATTGACAAGGATGAATATCCACAAACTGCTGAAA
TTGAAAGTCGTTGTGTTCATATTTTAGCGGATTTGTGGAATTCACCAGAAAGTTCTGAAA
CTATTGGTTGTTCAACTACTGGATCTAGTGAAGCTGCAATGTTGGGTGGAATGGCTTTGA
AATGGAGATGGAGAGAAAATAGAAAGAAACAAGGTAAACCATTTGATAAACCAAACATTG
TAACTGGTCCAGTTCAAATTTGTTGGCATAAGTTTGCACTATACTTTGATATTGAATTAA
GAGAAGTACCAATGGAACATGACCGTTACATAATGACACCAGAGGAAGCCATAA------
----GGATTTTAGACTACCACGTGTTAAATCAATTAATGGCTCTGGTCATAAATTTGGTC
TATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAAAATGACATTCACAAGGATT
TGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAACATTTTCATTGAATTTCTCAC
GTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCGCCATGGTCGTAGTGGAT
ATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTCATTTCCAAGCAAGTTAAAA
AACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTCCAGGTGCATGTTGGA
AATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGACCTTTCAGATAGAATGAGAA
ATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTACCAGATATTGTAGTTCAAA
GAGTATTAATTAGACATGGTTTCAGTCATGATATGGCAATGCTCTTAATTGAAGATTTCA
ATCGTAGTATTGAATATTTTGATAAACATCCAATGGTTCAAAGTATTTCAAAAGATGAAG
GTCAATCATTCCATCATTAAAATTAAAAAAAAAAAAATAAAAAAAAAAGCATCAATAATT
AATAATTAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 1282
Full length Seq ID -
Full length Seq. -
Length of full length seq. -