SLH287
Library SL
(Link to library)
Clone ID SLH287
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16243-1
Original site URL
Representative seq. ID SLH287Z
(Link to Original site)
Representative DNA sequence
>SLH287 (SLH287Q) /CSM/SL/SLH2-D/SLH287Q.Seq.d/
XXXXXXXXXXAAAAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCG
AGGATGGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTG
CAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACT
CTAGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAA
GATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCAT
CCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCA
CCACTAAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACA
GTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTT
TAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTAC
ATCGTCGTAAAGGTAAATATGGTGTAATCTCTATGTGTATTGGTACTGGCTTAGGTGCTG
CAGCTGTTGTTCGTACAGATTATT
sequence update 1998. 7. 2
Translated Amino Acid sequence
---KAGKFDDEIVPVTVKTEDGKTIVVDKDEGIREKTTVADLAKLKPAFKEGGTTTAGNS
SQMSDGAAACLVMKRSTAERLGLKVELVFVAFAAVGVEPSIMGIGPAVAIPAALKQAGLT
TKDIDVFEINEAFASQAFYSCKVLGLDMNKVNPNGSGIALGHPLGATGARQMATISRELH
RRKGKYGVISMCIGTGLGAAAVVRTDY


Translated Amino Acid sequence (All Frames)
Frame A:
---KAGKFDDEIVPVTVKTEDGKTIVVDKDEGIREKTTVADLAKLKPAFKEGGTTTAGNS
SQMSDGAAACLVMKRSTAERLGLKVELVFVAFAAVGVEPSIMGIGPAVAIPAALKQAGLT
TKDIDVFEINEAFASQAFYSCKVLGLDMNKVNPNGSGIALGHPLGATGARQMATISRELH
RRKGKYGVISMCIGTGLGAAAVVRTDY


Frame B:
---kqvnltmksfqsp*rprmakpsssiktkvsvrkpplqiwpn*nqlskrvvqpplvtl
vk*vmvpplv*l*kevppkdwvsrlnwfs*llllsvsnhplwvlvqplqfqpp*nklvsp
lkistflksmkllllkhftvvrfwvwi*tkliqmalvsl*vih*vllvpvkwlpfqenyi
vvkvnmv*slcvlvla*vlqllfvqii


Frame C:
---sr*i*r*nrsshrkdrgwqnhrrr*rrryp*enhrcrfgqiktsfqrgwynhrw*l*
sne*wcrrlfsyekkyrrkigsqg*igfrsfcccrcrtihygywssrcnssrlktswshh
*ryrrf*nq*sfcfssilql*gfgfgyeqs*skwlwyrfrssircywcpsngyhfkrits
s*r*iwcnlyvywywlrccsccsyrl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSJ636 (SSJ636Q) /CSM/SS/SSJ6-B/SSJ636Q.Seq.d/ 1217 0.0
SLH575 (SLH575Q) /CSM/SL/SLH5-D/SLH575Q.Seq.d/ 1217 0.0
SLH287 (SLH287Q) /CSM/SL/SLH2-D/SLH287Q.Seq.d/ 1217 0.0
SLG794 (SLG794Q) /CSM/SL/SLG7-D/SLG794Q.Seq.d/ 1217 0.0
SLG762 (SLG762Q) /CSM/SL/SLG7-C/SLG762Q.Seq.d/ 1217 0.0
SLG603 (SLG603Q) /CSM/SL/SLG6-A/SLG603Q.Seq.d/ 1217 0.0
SLE133 (SLE133Q) /CSM/SL/SLE1-B/SLE133Q.Seq.d/ 1217 0.0
SLB376 (SLB376Q) /CSM/SL/SLB3-D/SLB376Q.Seq.d/ 1217 0.0
SLA217 (SLA217Q) /CSM/SL/SLA2-A/SLA217Q.Seq.d/ 1217 0.0
AFO183 (AFO183Q) /CSM/AF/AFO1-D/AFO183Q.Seq.d/ 1193 0.0

own update 2001. 8.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 1217 0.0 1
(AU039942) Dictyostelium discoideum slug cDNA, clone SLG794. 1217 0.0 1
(AU039924) Dictyostelium discoideum slug cDNA, clone SLG762. 1217 0.0 1
(AU039858) Dictyostelium discoideum slug cDNA, clone SLG603. 1217 0.0 1
(AU039333) Dictyostelium discoideum slug cDNA, clone SLH575. 1217 0.0 1
(AU039254) Dictyostelium discoideum slug cDNA, clone SLH287. 1217 0.0 1
(AU034653) Dictyostelium discoideum slug cDNA, clone SLE133. 1217 0.0 1
(AU033736) Dictyostelium discoideum slug cDNA, clone SLB376. 1217 0.0 1
(C90698) Dictyostelium discoideum slug cDNA, clone SSJ636. 1217 0.0 1
(C25536) Dictyostelium discoideum slug cDNA, clone SLA217. 1217 0.0 1
dna update 2009. 5.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso... 398 e-110
FJ502019_1(FJ502019|pid:none) Aristichthys nobilis clone A101 ac... 245 6e-64
BC054299_1(BC054299|pid:none) Xenopus laevis acetyl-Coenzyme A a... 245 8e-64
EU964831_1(EU964831|pid:none) Zea mays clone 281881 3-ketoacyl-C... 242 7e-63
BT034496_1(BT034496|pid:none) Zea mays full-length cDNA clone ZM... 242 7e-63
J02749_1(J02749|pid:none) Rat peroxisomal 3-ketoacyl-CoA thiolas... 241 1e-62
(P21775) RecName: Full=3-ketoacyl-CoA thiolase A, peroxisomal; ... 241 1e-62
BC124019_1(BC124019|pid:none) Xenopus tropicalis acetyl-Coenzyme... 241 1e-62
M32801_1(M32801|pid:none) Rat 3-ketoacyl-CoA thiolase 2 mRNA, co... 241 2e-62
AK160568_1(AK160568|pid:none) Mus musculus ES cells cDNA, RIKEN ... 241 2e-62
protein update 2009. 6. 4
PSORT

psg: 0.75 gvh: 0.26 alm: 0.28 top: 0.33 tms: 0.13 mit: 0.16 mip: 0.00
nuc: 0.02 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

32.0 %: endoplasmic reticulum
28.0 %: plasma membrane
16.0 %: mitochondrial
8.0 %: nuclear
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for SLH287 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLH287Z
3' end seq.
>SLH287Z.Seq
----------AAAAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCG
AGGATGGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTG
CAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACT
CTAGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAA
GATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCAT
CCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCA
CCACTAAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACA
GTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTT
TAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTAC
ATCGTCGTAAAGGTAAATATGGTGTAATCTCTATGTGTATTGGTACTGGCTTAGGTGCTG
CAGCTGTTGTTCGTACAGATTATT
Length of 3' end seq. 614
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -