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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH278
Library SL
(Link to library)
Clone ID SLH278
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SLH278Z
(Link to Original site)
Representative DNA sequence 
>SLH278 (SLH278Q) /CSM/SL/SLH2-D/SLH278Q.Seq.d/
XXXXXXXXXXAAGAAAAATTAGCCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACT
GCTGCCTCATCATCAGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTCATCACC
ATTGGTAACGAACGTTTCCGTTGTCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATG
GAATCAGCTGGTATCCACGAAACCACCTACAACTCCATCATGAAATGTGATGTTGATATC
CGTAAAGATTTATACGGTAACGTCGTCTTATCCGGTGGTACAACTATGTTCCCAGGTATT
GCTGATCGTATGAACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATC
ATTGCCCCACCAGAACGTAAATACTCTGTTTGGATTGGTGGATCTATCTTAGCTTCACTC
TCAACTTTCCAACAAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATT
GTCCACAGAAAATGTTTCTAAACAATTAATAAATATGTTGTATTTTATTTAAACTTAA
sequence update 1998. 7. 2
Translated Amino Acid sequence 
---EKLAYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGME
SAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKII
APPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF*tinkyvvfylnl
Translated Amino Acid sequence (All Frames) 
Frame A:
---rkislrrprl*s*nanccliisprkiiritrrsshhhw*rtfplsrsplptiilryg
iswyprnhlqlhhem*c*yp*rfir*rrlirwynyvpryc*syeqrincfspinhen*nh
cptrt*ilcldwwiylsftlnfptnvdlqrri*rirsincpqkmflnn**iccilfkl


Frame B:
---EKLAYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGME
SAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKII
APPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF*tinkyvvfylnl


Frame C:
---kn*ptspstlklkckllphhqpsknhtnyqtvkssplvtnvsvvqkpssnhhs*vwn
qlvstkppttps*nvmlisvkiytvtssypvvqlcsqvlliv*tkn*ll*phqp*klksl
phqnvntlfglvdls*lhsqlsnkcgspkknmtnqvhqlstenvskqlinmlyfi*t*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH375 (SLH375Q) /CSM/SL/SLH3-D/SLH375Q.Seq.d/                       1047   0.0
SLH278 (SLH278Q) /CSM/SL/SLH2-D/SLH278Q.Seq.d/                       1047   0.0
SLE496 (SLE496Q) /CSM/SL/SLE4-D/SLE496Q.Seq.d/                       1047   0.0
SLE401 (SLE401Q) /CSM/SL/SLE4-A/SLE401Q.Seq.d/                       1047   0.0
SLE169 (SLE169Q) /CSM/SL/SLE1-C/SLE169Q.Seq.d/                       1047   0.0
SLE148 (SLE148Q) /CSM/SL/SLE1-B/SLE148Q.Seq.d/                       1047   0.0
SLB670 (SLB670Q) /CSM/SL/SLB6-C/SLB670Q.Seq.d/                       1047   0.0
SLB610 (SLB610Q) /CSM/SL/SLB6-A/SLB610Q.Seq.d/                       1047   0.0
SLB564 (SLB564Q) /CSM/SL/SLB5-C/SLB564Q.Seq.d/                       1047   0.0
SLB152 (SLB152Q) /CSM/SL/SLB1-C/SLB152Q.Seq.d/                       1047   0.0
own update 1999.10.15
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU284267) Dictyostelium discoideum gamete cDNA clone:FC-AG0...  1047   0.0    1
(AU039983) Dictyostelium discoideum slug cDNA, clone SLH375.     1047   0.0    1
(AU039250) Dictyostelium discoideum slug cDNA, clone SLH278.     1047   0.0    1
(AU035016) Dictyostelium discoideum slug cDNA, clone SLE496.     1047   0.0    1
(AU034954) Dictyostelium discoideum slug cDNA, clone SLE401.     1047   0.0    1
(AU034674) Dictyostelium discoideum slug cDNA, clone SLE169.     1047   0.0    1
(AU034662) Dictyostelium discoideum slug cDNA, clone SLE148.     1047   0.0    1
(AU033966) Dictyostelium discoideum slug cDNA, clone SLB670.     1047   0.0    1
(AU033916) Dictyostelium discoideum slug cDNA, clone SLB610.     1047   0.0    1
(AU033882) Dictyostelium discoideum slug cDNA, clone SLB564.     1047   0.0    1
dna update 2009. 5.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   326   2e-88
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   326   2e-88
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        326   2e-88
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   322   4e-87
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   322   4e-87
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   322   4e-87
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1;          319   2e-86
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp...   319   3e-86
AY615868_1(AY615868|pid:none) Amastigomonas marina actin gene, p...   318   5e-86
AY294154_1(AY294154|pid:none) Thecamoeba similis actin mRNA, com...   317   2e-85
protein update 2009. 6. 4
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLH278 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLH278Z
3' end seq. 
>SLH278Z.Seq
----------AAGAAAAATTAGCCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACT
GCTGCCTCATCATCAGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTCATCACC
ATTGGTAACGAACGTTTCCGTTGTCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATG
GAATCAGCTGGTATCCACGAAACCACCTACAACTCCATCATGAAATGTGATGTTGATATC
CGTAAAGATTTATACGGTAACGTCGTCTTATCCGGTGGTACAACTATGTTCCCAGGTATT
GCTGATCGTATGAACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATC
ATTGCCCCACCAGAACGTAAATACTCTGTTTGGATTGGTGGATCTATCTTAGCTTCACTC
TCAACTTTCCAACAAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATT
GTCCACAGAAAATGTTTCTAAACAATTAATAAATATGTTGTATTTTATTTAAACTTAA
Length of 3' end seq. 528
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -