>SLH274 (SLH274Q) /CSM/SL/SLH2-D/SLH274Q.Seq.d/
TTTTTTTTTTTTTTTGATGCTTATATTTTTGATGTTTGTAAATATGTAATTATAACAAAA
TTCTACAATATGAAAGATTTGATTGATGGTTTACTAGGTGATATCATCTCATCTTTCTTT
TTAATTGATTTTTTTTATATATTTCTAAATTCCTACTTCAGCTCCTGATGATGAAGAAGA
TGAGGATGATGAAGAGGATGAAGAGGATGATGAAGATGATGAGGAAGACGAAGATGAAGA
TGATGAGGAAGACGAAGATGAAGATGAAGAGGATGAAGAAGAGGATGATGATGATGAGGA
TGATGATGAGGATGATGATGAGGATGATGATGAGGATGATXXXXXXXXXX

ffff*clyf*cl*icnynkilqyerfd*wftr*yhliflfn*FFLYISKFLLQLLMMKKM
RMMKRMKRMMKMMRKTKMKMMRKTKMKMKRMKKRMMMMRMMMRMMMRMMMRM---

Frame A:
fffffdayifdvckyviitkfynmkdlidgllgdiissfflidffyiflnsyfss***rr
*g**rg*rg**r**grrr*r**grrr*r*rg*rrg****g***g***g***g*---


Frame B:
fffflmliflmfvnm*l*qnsti*ki*lmvy*visshlsf*liffiyf*iptsapddeed
eddeedeeddeddeedededdeedededeedeeeddddedddedddeddded---


Frame C:
ffff*clyf*cl*icnynkilqyerfd*wftr*yhliflfn*FFLYISKFLLQLLMMKKM
RMMKRMKRMMKMMRKTKMKMMRKTKMKMKRMKKRMMMMRMMMRMMMRMMMRM---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH274 (SLH274Q) /CSM/SL/SLH2-D/SLH274Q.Seq.d/                        254   8e-67
SSM393 (SSM393Q) /CSM/SS/SSM3-D/SSM393Q.Seq.d/                        248   5e-65
FC-IC0943 (FC-IC0943Q) /CSM/FC-IC/FC-IC0943Q.Seq.d/                    38   0.085
CHH180 (CHH180Q) /CSM/CH/CHH1-D/CHH180Q.Seq.d/                         38   0.085
SLH202 (SLH202Q) /CSM/SL/SLH2-A/SLH202Q.Seq.d/                         34   1.3
SLG445 (SLG445Q) /CSM/SL/SLG4-B/SLG445Q.Seq.d/                         34   1.3
SLD402 (SLD402Q) /CSM/SL/SLD4-A/SLD402Q.Seq.d/                         34   1.3
CFH192 (CFH192Q) /CSM/CF/CFH1-D/CFH192Q.Seq.d/                         34   1.3
VSI505 (VSI505Q) /CSM/VS/VSI5-A/VSI505Q.Seq.d/                         32   5.3
VSF273 (VSF273Q) /CSM/VS/VSF2-D/VSF273Q.Seq.d/                         32   5.3

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU062029) Dictyostelium discoideum slug cDNA, clone SLH274.      224   1e-65  2
(AU074898) Dictyostelium discoideum slug cDNA, clone SSM393.      218   6e-64  2
(FF300106) 279333452 Pea aphid whole body normalized full le...    42   0.21   2
(FF299709) 279333293 Pea aphid whole body normalized full le...    42   0.24   2
(FF300101) 279333445 Pea aphid whole body normalized full le...    42   0.25   2
(CN854647) 000528AAAA001191HT (AAAA) Royal Gala 59 DAFB frui...    34   0.27   3
(CN857433) 000722AAAA006011HT (AAAA) Royal Gala 59 DAFB frui...    34   0.43   3
(CN856273) 000721AAAA004208HT (AAAA) Royal Gala 59 DAFB frui...    34   0.43   3
(CN857461) 000722AAAA006072HT (AAAA) Royal Gala 59 DAFB frui...    34   0.45   3
(CN856779) 000721AAAA004906HT (AAAA) Royal Gala 59 DAFB frui...    34   0.47   3

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 145,039,980

 psg: 0.94  gvh: 0.31  alm: 0.43  top: 0.67  tms: 0.00  mit: 0.82  mip: 0.00
 nuc: 0.37  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: mitochondrial
	 24.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for SLH274 is mit

>SLH274F.Seq
TTTTTTTTTTTTTTTGATGCTTATATTTTTGATGTTTGTAAATATGTAATTATAACAAAA
TTCTACAATATGAAAGATTTGATTGATGGTTTACTAGGTGATATCATCTCATCTTTCTTT
TTAATTGATTTTTTTTATATATTTCTAAATTCCTACTTCAGCTCCTGATGATGAAGAAGA
TGAGGATGATGAAGAGGATGAAGAGGATGATGAAGATGATGAGGAAGACGAAGATGAAGA
TGATGAGGAAGACGAAGATGAAGATGAAGAGGATGAAGAAGAGGATGATGATGATGAGGA
TGATGATGAGGATGATGATGAGGATGATGATGAGGATGAT----------