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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH268
Library SL
(Link to library)
Clone ID SLH268
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLH268Z
(Link to Original site)
Representative DNA sequence 
>SLH268 (SLH268Q) /CSM/SL/SLH2-C/SLH268Q.Seq.d/
XXXXXXXXXXCTGGTGGTTATATTTCTCGTACTGCTAGTCGTGTTGGTAACTCTATACGT
AGCAGAGCTACTCGTTATGCTAATCAAGGTTACAATTCCATGAGAAATGGTGCCCAAAGA
GCTGGCAACGGCGCACGTAATTATGCTAATGAAGGTTACAATTCCGTGAGAGATGGTGCA
CAAAGAGCTGGCAACGGCGCACGTAATTATGCTCAACAAGGTTATCAAGCATGGAGAGAA
GGTGTCAATGAGATTAGTGATGATATCGCCAATACTGCACATGATGTAGGTGATGGTTTC
GCCAATACTGCACGTGAAGTAGGTGATGGAATTAGAATCACTGCAGAGGAGGGATATGAA
CTCATTAAAGATGGAGCTGAAGAAACTTGGGTGAAGAAATATTAAAGGTTATCCTTAATT
AAAATTAAAAAAGCACAACAAAGAATGGCTGAACAAGAAGAAAGAAGAAGGTTGATGCAA
GAAGAAAGTGAAAGAAGACGATTGCAAAGAAACAGAGAAAGACAAGAGCCAATTAGAACT
TATACAACTGCACAAGAAGCTCAACGATATATACCCAAACCTGGTAACTTTGCACGTAAA
AGAGGTGCAAGAAATTAAAAAAAGAAAAAATAAAAATAATTAAAAGAAAT
sequence update 1998. 7. 2
Translated Amino Acid sequence 
---GGYISRTASRVGNSIRSRATRYANQGYNSMRNGAQRAGNGARNYANEGYNSVRDGAQ
RAGNGARNYAQQGYQAWREGVNEISDDIANTAHDVGDGFANTAREVGDGIRITAEEGYEL
IKDGAEETWVKKY*rlslikikkaqqrmaeqeerrrlmqeeserrrlqrnrerqepirty
ttaqeaqryipkpgnfarkrgarn*kkkk*k*lke
Translated Amino Acid sequence (All Frames) 
Frame A:
---wwlyfsyc*scw*lyt*qsyslc*srlqfhekwcpkswqrrt*lc**rlqfrerwct
kswqrrt*lcstrlssmerrcq*d***yrqyct*cr*wfrqyct*sr*wn*nhcrggi*t
h*rws*rnlgeeilkviln*n*ksttkng*trrkkkvdarrk*kktiakkqrktran*nl
ynctrsstiytqtw*lct*krckklkkekikiikrn


Frame B:
---GGYISRTASRVGNSIRSRATRYANQGYNSMRNGAQRAGNGARNYANEGYNSVRDGAQ
RAGNGARNYAQQGYQAWREGVNEISDDIANTAHDVGDGFANTAREVGDGIRITAEEGYEL
IKDGAEETWVKKY*rlslikikkaqqrmaeqeerrrlmqeeserrrlqrnrerqepirty
ttaqeaqryipkpgnfarkrgarn*kkkk*k*lke


Frame C:
---vviflvllvvlvtlyvaellvmlikvtip*emvpkelatahvimlmkvtip*emvhk
elatahvimlnkvikhgekvsmrlvmispilhmm*vmvspilhvk*vmeleslqrrdmns
lkmelkklg*rnikgyp*lklkkhnkewlnkkkeeg*ckkkvkeddcketekdksqleli
qlhkklndiypnlvtlhvkevqeikkrknknn*kk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH268 (SLH268Q) /CSM/SL/SLH2-C/SLH268Q.Seq.d/                        870   0.0
SLE562 (SLE562Q) /CSM/SL/SLE5-C/SLE562Q.Seq.d/                        854   0.0
SLE376 (SLE376Q) /CSM/SL/SLE3-D/SLE376Q.Seq.d/                        854   0.0
SLB691 (SLB691Q) /CSM/SL/SLB6-D/SLB691Q.Seq.d/                        854   0.0
SFL412 (SFL412Q) /CSM/SF/SFL4-A/SFL412Q.Seq.d/                        854   0.0
SFL221 (SFL221Q) /CSM/SF/SFL2-A/SFL221Q.Seq.d/                        854   0.0
SFK831 (SFK831Q) /CSM/SF/SFK8-B/SFK831Q.Seq.d/                        854   0.0
SFK737 (SFK737Q) /CSM/SF/SFK7-B/SFK737Q.Seq.d/                        854   0.0
SFK728 (SFK728Q) /CSM/SF/SFK7-B/SFK728Q.Seq.d/                        854   0.0
SFJ550 (SFJ550Q) /CSM/SF/SFJ5-C/SFJ550Q.Seq.d/                        854   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039246) Dictyostelium discoideum slug cDNA, clone SLH268.      825   0.0    2
(AU033982) Dictyostelium discoideum slug cDNA, clone SLB691.      809   0.0    2
(BJ400697) Dictyostelium discoideum cDNA clone:dds14j09, 3' ...   809   0.0    2
(BJ342924) Dictyostelium discoideum cDNA clone:dda15m11, 3' ...   809   0.0    2
(AU034833) Dictyostelium discoideum slug cDNA, clone SLE562.      809   0.0    2
(BJ342298) Dictyostelium discoideum cDNA clone:dda13h11, 3' ...   809   0.0    2
(AU034943) Dictyostelium discoideum slug cDNA, clone SLE376.      809   0.0    2
(BJ347723) Dictyostelium discoideum cDNA clone:dda27p22, 3' ...   809   0.0    2
(BJ409691) Dictyostelium discoideum cDNA clone:dds42m22, 3' ...   809   0.0    2
(BJ346113) Dictyostelium discoideum cDNA clone:dda29l02, 3' ...   809   0.0    2
dna update 2009. 5.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116551_24(AC116551|pid:none) Dictyostelium discoideum chromoso...    61   3e-08
AM421808_498(AM421808|pid:none) Neisseria meningitidis serogroup...    50   6e-05
Z69360_4(Z69360|pid:none) Caenorhabditis elegans Cosmid F25H8, c...    49   1e-04
AC146855_28(AC146855|pid:none) Medicago truncatula clone mth2-16...    49   1e-04
Z69360_3(Z69360|pid:none) Caenorhabditis elegans Cosmid F25H8, c...    49   1e-04
AJ628940_1(AJ628940|pid:none) Pisum sativum mRNA for late embryo...    49   2e-04
T21369(T21369)hypothetical protein F25H8.5a - Caenorhabditis ele...    47   4e-04
AL844509_662(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    47   5e-04
CT573213_2889(CT573213|pid:none) Frankia alni str. ACN14A chromo...    45   0.002
BT050559_1(BT050559|pid:none) Drosophila melanogaster AT13054 fu...    44   0.005
protein update 2009. 6. 4
PSORT 

 psg: 0.53  gvh: 0.29  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.56  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: mitochondrial
	 24.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: Golgi
	  4.0 %: endoplasmic reticulum

>> prediction for SLH268 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLH268Z
3' end seq. 
>SLH268Z.Seq
----------CTGGTGGTTATATTTCTCGTACTGCTAGTCGTGTTGGTAACTCTATACGT
AGCAGAGCTACTCGTTATGCTAATCAAGGTTACAATTCCATGAGAAATGGTGCCCAAAGA
GCTGGCAACGGCGCACGTAATTATGCTAATGAAGGTTACAATTCCGTGAGAGATGGTGCA
CAAAGAGCTGGCAACGGCGCACGTAATTATGCTCAACAAGGTTATCAAGCATGGAGAGAA
GGTGTCAATGAGATTAGTGATGATATCGCCAATACTGCACATGATGTAGGTGATGGTTTC
GCCAATACTGCACGTGAAGTAGGTGATGGAATTAGAATCACTGCAGAGGAGGGATATGAA
CTCATTAAAGATGGAGCTGAAGAAACTTGGGTGAAGAAATATTAAAGGTTATCCTTAATT
AAAATTAAAAAAGCACAACAAAGAATGGCTGAACAAGAAGAAAGAAGAAGGTTGATGCAA
GAAGAAAGTGAAAGAAGACGATTGCAAAGAAACAGAGAAAGACAAGAGCCAATTAGAACT
TATACAACTGCACAAGAAGCTCAACGATATATACCCAAACCTGGTAACTTTGCACGTAAA
AGAGGTGCAAGAAATTAAAAAAAGAAAAAATAAAAATAATTAAAAGAAAT
Length of 3' end seq. 640
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -