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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH265
Library SL
(Link to library)
Clone ID SLH265
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13901-1
Original site URL
Representative seq. ID SLH265Z
(Link to Original site)
Representative DNA sequence 
>SLH265 (SLH265Q) /CSM/SL/SLH2-C/SLH265Q.Seq.d/
XXXXXXXXXXGATTTACCAAAGAAATACGTTGGTTATTCAACTTGTTTCCGTAAAGAAGC
CGGTTCACATGGTCGTGATACTTGGGGCATTTTCAGAGTACATCAATTTGAAAAGATTGA
ACAATTCTGCATCACTGAACCAGAGAAGTCTTGGGATATGATGGAGGAGATGATCAATAA
CTCTGAACAATTCTACCAAGAGTTGGGTATTCCATATCGTGTCGTTAACATTGTTTCTGG
TGCTCTCAATAATGCCGCCTCAAAGAAATACGATTTAGAAGGTTGGTTCCCAGGTTACAA
TCAATACAGAGAGTTGGTCTCTTGTTCCATTTGTACCGATTATCAATCACGTGATCTCGA
AATTCGTTGTGGTATGAAGAAACAAGGTCAACAACAAAAGAAATACGTTCATATGTTAAA
TTCAACACTCGCTGCCACAACTCGTGTCATTTGTTGTATCCTCGAAAATTATCAAACTGA
AGGTGGTATCACTGTTCCAGTTCCACTTCGTCCATACTTGGGTAAAGACTTTATCCCATT
CGTTAAAGCTGCTCCAAAACAAAAAGCTATCCCAAAACAAAAAACAACTACTCCAGAACA
AAAATAAATAAATAAAATAAATATAAATTAATATTTAATCA
sequence update 1998. 7. 2
Translated Amino Acid sequence 
---LPKKYVGYSTCFRKEAGSHGRDTWGIFRVHQFEKIEQFCITEPEKSWDMMEEMINNS
EQFYQELGIPYRVVNIVSGALNNAASKKYDLEGWFPGYNQYRELVSCSICTDYQSRDLEI
RCGMKKQGQQQKKYVHMLNSTLAATTRVICCILENYQTEGGITVPVPLRPYLGKDFIPFV
KAAPKQKAIPKQKTTTPEQK*inkinin*yli
Translated Amino Acid sequence (All Frames) 
Frame A:
---iyqrntlviqlvsvkkpvhmvvilgafseyinlkrlnnsaslnqrslgi*wrr*sit
lnnstkswvfhivsltlflvlsimppqrnti*kvgsqvtinteswslvpfvpiinhvisk
fvvv*rnkvnnkrntfic*iqhslpqlvsfvvsskiiklkvvslfqfhfvhtwvktlshs
lkllqnkklsqnkkqllqnknk*ik*i*ini*s


Frame B:
---ftkeirwlfnlfp*rsrftws*ylghfqstsi*kd*tilhh*trevlgydggddq*l
*tilprvgysiscr*hcfwcsq*crlkeirfrrlvprlqsiqrvgllfhlyrlsit*srn
slwyeetrsttkeirsyvkfntrchnschllyprklsn*rwyhcssstssilg*rlypir
*scsktksypktknnysrtkink*nkyklifn


Frame C:
---LPKKYVGYSTCFRKEAGSHGRDTWGIFRVHQFEKIEQFCITEPEKSWDMMEEMINNS
EQFYQELGIPYRVVNIVSGALNNAASKKYDLEGWFPGYNQYRELVSCSICTDYQSRDLEI
RCGMKKQGQQQKKYVHMLNSTLAATTRVICCILENYQTEGGITVPVPLRPYLGKDFIPFV
KAAPKQKAIPKQKTTTPEQK*inkinin*yli
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH265 (SLH265Q) /CSM/SL/SLH2-C/SLH265Q.Seq.d/                       1059   0.0
VFL442 (VFL442Q) /CSM/VF/VFL4-B/VFL442Q.Seq.d/                       1051   0.0
VFG802 (VFG802Q) /CSM/VF/VFG8-A/VFG802Q.Seq.d/                       1051   0.0
VFD103 (VFD103Q) /CSM/VF/VFD1-A/VFD103Q.Seq.d/                       1051   0.0
SLG306 (SLG306Q) /CSM/SL/SLG3-A/SLG306Q.Seq.d/                       1051   0.0
SFL392 (SFL392Q) /CSM/SF/SFL3-D/SFL392Q.Seq.d/                       1051   0.0
SFL245 (SFL245Q) /CSM/SF/SFL2-B/SFL245Q.Seq.d/                       1051   0.0
SFI596 (SFI596Q) /CSM/SF/SFI5-D/SFI596Q.Seq.d/                       1051   0.0
CFB612 (CFB612Q) /CSM/CF/CFB6-A/CFB612Q.Seq.d/                       1051   0.0
AFO652 (AFO652Q) /CSM/AF/AFO6-C/AFO652Q.Seq.d/                       1051   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039245) Dictyostelium discoideum slug cDNA, clone SLH265.     1076   0.0    1
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...  1068   0.0    1
(AU039742) Dictyostelium discoideum slug cDNA, clone SLG306.     1068   0.0    1
(BJ433901) Dictyostelium discoideum cDNA clone:ddv23d12, 3' ...  1068   0.0    1
(BJ431392) Dictyostelium discoideum cDNA clone:ddv14d02, 3' ...  1068   0.0    1
(BJ430375) Dictyostelium discoideum cDNA clone:ddv7e01, 3' e...  1068   0.0    1
(BJ402993) Dictyostelium discoideum cDNA clone:dds18o23, 3' ...  1068   0.0    1
(BJ401616) Dictyostelium discoideum cDNA clone:dds23h23, 3' ...  1068   0.0    1
(BJ401473) Dictyostelium discoideum cDNA clone:dds23i12, 3' ...  1068   0.0    1
(BJ373806) Dictyostelium discoideum cDNA clone:ddc4g04, 3' e...  1068   0.0    1
dna update 2009. 6. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU640366_559(CU640366|pid:none) Podospora anserina genomic DNA c...   268   1e-70
BX294023_18(BX294023|pid:none) Neurospora crassa DNA linkage gro...   265   6e-70
AE016815_123(AE016815|pid:none) Ashbya gossypii (= Eremothecium ...   262   7e-69
CR382132_109(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...   259   6e-68
CR380957_498(CR380957|pid:none) Candida glabrata strain CBS138 c...   258   1e-67
CR382121_442(CR382121|pid:none) Kluyveromyces lactis strain NRRL...   256   3e-67
X04884_1(X04884|pid:none) Yeast serS gene for seryl-tRNA synthet...   255   8e-67
CR382139_73(CR382139|pid:none) Debaryomyces hansenii strain CBS7...   254   1e-66
(Q9HGT6) RecName: Full=Seryl-tRNA synthetase, cytoplasmic;      ...   253   2e-66
FM992690_262(FM992690|pid:none) Candida dubliniensis CD36 chromo...   253   2e-66
protein update 2009. 6. 4
PSORT 

 psg: 0.86  gvh: 0.31  alm: 0.38  top: 0.43  tms: 0.00  mit: 0.28  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 20.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane

>> prediction for SLH265 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLH265Z
3' end seq. 
>SLH265Z.Seq
----------GATTTACCAAAGAAATACGTTGGTTATTCAACTTGTTTCCGTAAAGAAGC
CGGTTCACATGGTCGTGATACTTGGGGCATTTTCAGAGTACATCAATTTGAAAAGATTGA
ACAATTCTGCATCACTGAACCAGAGAAGTCTTGGGATATGATGGAGGAGATGATCAATAA
CTCTGAACAATTCTACCAAGAGTTGGGTATTCCATATCGTGTCGTTAACATTGTTTCTGG
TGCTCTCAATAATGCCGCCTCAAAGAAATACGATTTAGAAGGTTGGTTCCCAGGTTACAA
TCAATACAGAGAGTTGGTCTCTTGTTCCATTTGTACCGATTATCAATCACGTGATCTCGA
AATTCGTTGTGGTATGAAGAAACAAGGTCAACAACAAAAGAAATACGTTCATATGTTAAA
TTCAACACTCGCTGCCACAACTCGTGTCATTTGTTGTATCCTCGAAAATTATCAAACTGA
AGGTGGTATCACTGTTCCAGTTCCACTTCGTCCATACTTGGGTAAAGACTTTATCCCATT
CGTTAAAGCTGCTCCAAAACAAAAAGCTATCCCAAAACAAAAAACAACTACTCCAGAACA
AAAATAAATAAATAAAATAAATATAAATTAATATTTAATCA
Length of 3' end seq. 631
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -