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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH264
Library SL
(Link to library)
Clone ID SLH264
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SLH264Z
(Link to Original site)
Representative DNA sequence 
>SLH264 (SLH264Q) /CSM/SL/SLH2-C/SLH264Q.Seq.d/
XXXXXXXXXXAAAATCATACGAATTACCAGACGGTCAAGTCATCACCATCGGTAATGAAC
GTTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAATCAGCTGGTA
TCCACGAAACCACCTATAACTCCATCATGAAATGTGATGTTGATATCCGTAAAGATTTAT
ACGGTAATGTCGTCTTATCTGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGA
ACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCATTGCTCCACCAG
AACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCTCAACTTTCCAAC
AAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTGTCCACAGAAAAT
GTTTCTAAACAATTAAAACTAGTGATGAAAGTGCTTCTCACACAAACAAATATATTTAAA
TGTATAATAATAATAAAATATAATTATTTTTAATGGTTGTTGATCTTTATCCGACTATCA
AA
sequence update 1998. 7. 2
Translated Amino Acid sequence 
---KSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLY
GNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQ
MWISKEEYDESGPSIVHRKCF*tiktsdesashtnkyi*mynnnki*lflmvvdlyptik
Translated Amino Acid sequence (All Frames) 
Frame A:
---KSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLY
GNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQ
MWISKEEYDESGPSIVHRKCF*tiktsdesashtnkyi*mynnnki*lflmvvdlyptik


Frame B:
---nhtnyqtvksspsvmnvsvaqkpssnhhs*vwnqlvstkppitps*nvmlisvkiyt
vmssylvvqlcsqvlliv*tkn*ll*phqp*klksllhqnvntlsglvdls*lhsqlsnk
cgspkknmtnqvhqlstenvskqlklvmkvlltqtnifkciiiikynyf*wllifirls


Frame C:
---iiritrrsshhhr**tfplprsplptiilrygiswyprnhl*lhhem*c*yp*rfir
*crliwwynyvpryc*syeqrincfspinhen*nhcstrt*ilcldwwiylsftlnfptn
vdlqrri*rirsincpqkmflnn*n***kcfshkqiylnv****niiifngc*slsdyq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFO858 (VFO858Q) /CSM/VF/VFO8-C/VFO858Q.Seq.d/                        906   0.0
VFO483 (VFO483Q) /CSM/VF/VFO4-D/VFO483Q.Seq.d/                        906   0.0
VFN701 (VFN701Q) /CSM/VF/VFN7-A/VFN701Q.Seq.d/                        906   0.0
VFM863 (VFM863Q) /CSM/VF/VFM8-C/VFM863Q.Seq.d/                        906   0.0
VFM725 (VFM725Q) /CSM/VF/VFM7-B/VFM725Q.Seq.d/                        906   0.0
VFM720 (VFM720Q) /CSM/VF/VFM7-A/VFM720Q.Seq.d/                        906   0.0
VFM705 (VFM705Q) /CSM/VF/VFM7-A/VFM705Q.Seq.d/                        906   0.0
VFM283 (VFM283Q) /CSM/VF/VFM2-D/VFM283Q.Seq.d/                        906   0.0
VFL589 (VFL589Q) /CSM/VF/VFL5-D/VFL589Q.Seq.d/                        906   0.0
VFK573 (VFK573Q) /CSM/VF/VFK5-D/VFK573Q.Seq.d/                        906   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039244) Dictyostelium discoideum slug cDNA, clone SLH264.      906   0.0    2
(AU034025) Dictyostelium discoideum slug cDNA, clone SLB819.      906   0.0    2
(AU052139) Dictyostelium discoideum slug cDNA, clone SLA108.      906   0.0    2
(AU052305) Dictyostelium discoideum slug cDNA, clone SLD120.      906   0.0    2
(AU035023) Dictyostelium discoideum slug cDNA, clone SLE509.      906   0.0    2
(AU039294) Dictyostelium discoideum slug cDNA, clone SLH364.      906   0.0    2
(AU284462) Dictyostelium discoideum gamete cDNA clone:FC-AX1...   906   0.0    2
(AU285049) Dictyostelium discoideum gamete cDNA clone:FCL-AC...   906   0.0    2
(AU284804) Dictyostelium discoideum gamete cDNA clone:FC-BL1...   906   0.0    2
(AU039293) Dictyostelium discoideum slug cDNA, clone SLH363.      906   0.0    2
dna update 2009. 5.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   283   2e-75
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   283   2e-75
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   283   2e-75
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        283   2e-75
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   281   7e-75
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   280   1e-74
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp...   278   6e-74
(P02578) RecName: Full=Actin-1;  &ATAX(A92886;A03004) &V00002_1(...   278   8e-74
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1;          278   8e-74
AY615868_1(AY615868|pid:none) Amastigomonas marina actin gene, p...   277   1e-73
protein update 2009. 6. 4
PSORT 

 psg: 0.75  gvh: 0.37  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 24.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for SLH264 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLH264Z
3' end seq. 
>SLH264Z.Seq
----------AAAATCATACGAATTACCAGACGGTCAAGTCATCACCATCGGTAATGAAC
GTTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAATCAGCTGGTA
TCCACGAAACCACCTATAACTCCATCATGAAATGTGATGTTGATATCCGTAAAGATTTAT
ACGGTAATGTCGTCTTATCTGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGA
ACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCATTGCTCCACCAG
AACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCTCAACTTTCCAAC
AAATGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTGTCCACAGAAAAT
GTTTCTAAACAATTAAAACTAGTGATGAAAGTGCTTCTCACACAAACAAATATATTTAAA
TGTATAATAATAATAAAATATAATTATTTTTAATGGTTGTTGATCTTTATCCGACTATCA
AA
Length of 3' end seq. 532
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -