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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH256
Library SL
(Link to library)
Clone ID SLH256
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12223-1
Original site URL
Representative seq. ID SLH256F
(Link to Original site)
Representative DNA sequence 
>SLH256 (SLH256Q) /CSM/SL/SLH2-C/SLH256Q.Seq.d/
CAGAATTGACCGGAGCTAAATTTGACAGACAAAATGAATATACCCGTATGTTTAGATATC
AAAGAAATTCATACATTTGTGGTTTCTGTCTCTATTTATTCTTTTTAATCTATCGTTCAC
AAGGTATCATTAGTCAATTATCAAATGTAGAAGCCTCAAAAACTGCCATTGAAAAGCAAA
CTAAAAATAATTTAAATACCGTCGAAACTCTCTTATCGGAAAATGAAAAATTAAAAACTG
AAATTAAAGACCTTAAAAAGATGGAAAAAGAACATAAAGCTATGAAATCTCAAGCTGAAA
ATACAACCAAAGAATATCTTAAACTCCAAGAAGAATATAATCAACTTTTAGGTAAAAAAC
CAAAAACTCAAAAGAAAGATGATTAATCATCTTAAAAATXXXXXXXXXX
sequence update 1999. 2. 9
Translated Amino Acid sequence 
ELTGAKFDRQNEYTRMFRYQRNSYICGFCLYLFFLIYRSQGIISQLSNVEASKTAIEKQT
KNNLNTVETLLSENEKLKTEIKDLKKMEKEHKAMKSQAENTTKEYLKLQEEYNQLLGKKP
KTQKKDD*ss*k---
Translated Amino Acid sequence (All Frames) 
Frame A:
qn*pelnltdkmnipvcldikeihtfvvsvsiysf*sivhkvslvnyqm*kpqklplksk
lkii*ipsklsyrkmkn*klklktlkrwkknikl*nlklkiqpknilnskkniinf*vkn
qklkrkminhlk---


Frame B:
ridrs*i*qtk*iypyv*iskkfihlwflslfilfnlsftryh*siikcrslknch*kan
*k*fkyrrnsligk*kikn*n*rp*kdgkrt*syeiss*kynqris*tprri*stfr*kt
knsker*liilk---


Frame C:
ELTGAKFDRQNEYTRMFRYQRNSYICGFCLYLFFLIYRSQGIISQLSNVEASKTAIEKQT
KNNLNTVETLLSENEKLKTEIKDLKKMEKEHKAMKSQAENTTKEYLKLQEEYNQLLGKKP
KTQKKDD*ss*k---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF120 (VSF120Q) /CSM/VS/VSF1-A/VSF120Q.Seq.d/                        444   e-124
VSB721 (VSB721Q) /CSM/VS/VSB7-A/VSB721Q.Seq.d/                        444   e-124
VSA222 (VSA222Q) /CSM/VS/VSA2-A/VSA222Q.Seq.d/                        444   e-124
SSI190 (SSI190Q) /CSM/SS/SSI1-D/SSI190Q.Seq.d/                        444   e-124
SSE426 (SSE426Q) /CSM/SS/SSE4-B/SSE426Q.Seq.d/                        444   e-124
SLJ523 (SLJ523Q) /CSM/SL/SLJ5-A/SLJ523Q.Seq.d/                        444   e-124
SLH256 (SLH256Q) /CSM/SL/SLH2-C/SLH256Q.Seq.d/                        444   e-124
SSK705 (SSK705Q) /CSM/SS/SSK7-A/SSK705Q.Seq.d/                        432   e-120
SSH311 (SSH311Q) /CSM/SS/SSH3-A/SSH311Q.Seq.d/                        387   e-107
VSB322 (VSB322Q) /CSM/VS/VSB3-A/VSB322Q.Seq.d/                        228   5e-59
own update 2001. 3.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU062026) Dictyostelium discoideum slug cDNA, clone SLH256.      351   e-131  3
(AU261362) Dictyostelium discoideum vegetative cDNA clone:VS...   351   e-130  3
(AU262201) Dictyostelium discoideum vegetative cDNA clone:VS...   351   e-130  3
(AU264738) Dictyostelium discoideum vegetative cDNA clone:VS...   351   e-130  3
(C94015) Dictyostelium discoideum slug cDNA, clone SSK705.        351   e-127  3
(AU038131) Dictyostelium discoideum slug cDNA, clone SSH311.      293   e-113  3
(AU072403) Dictyostelium discoideum slug cDNA, clone SSE426.      351   1e-92  1
(AU060374) Dictyostelium discoideum slug cDNA, clone SLJ523.      351   1e-92  1
(AU261952) Dictyostelium discoideum vegetative cDNA clone:VS...   163   3e-69  3
(AU053705) Dictyostelium discoideum slug cDNA, clone SLJ523.      131   1e-33  2
dna update 2009. 6. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54K74) RecName: Full=Endoplasmic reticulum transmembrane prote...   234   9e-61
BT078760_1(BT078760|pid:none) Lepeophtheirus salmonis clone lsal...    76   4e-13
BT080943_1(BT080943|pid:none) Caligus clemensi clone ccle-evs-51...    73   3e-12
BT076915_1(BT076915|pid:none) Caligus rogercresseyi clone crog-e...    69   7e-11
BT077060_1(BT077060|pid:none) Caligus rogercresseyi clone crog-e...    67   3e-10
BC079182_1(BC079182|pid:none) Rattus norvegicus B-cell receptor-...    64   1e-09
DQ525635_1(DQ525635|pid:none) Mesocricetus auratus BAP31 mRNA, c...    64   2e-09
AL590148_4(AL590148|pid:none) Zebrafish DNA sequence from clone ...    64   2e-09
AK008043_1(AK008043|pid:none) Mus musculus adult male small inte...    63   3e-09
AK151641_1(AK151641|pid:none) Mus musculus bone marrow macrophag...    63   3e-09
protein update 2009. 6. 4
PSORT 

 psg: 0.53  gvh: 0.64  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for SLH256 is nuc
5' end seq. ID SLH256F
5' end seq. 
>SLH256F.Seq
CAGAATTGACCGGAGCTAAATTTGACAGACAAAATGAATATACCCGTATGTTTAGATATC
AAAGAAATTCATACATTTGTGGTTTCTGTCTCTATTTATTCTTTTTAATCTATCGTTCAC
AAGGTATCATTAGTCAATTATCAAATGTAGAAGCCTCAAAAACTGCCATTGAAAAGCAAA
CTAAAAATAATTTAAATACCGTCGAAACTCTCTTATCGGAAAATGAAAAATTAAAAACTG
AAATTAAAGACCTTAAAAAGATGGAAAAAGAACATAAAGCTATGAAATCTCAAGCTGAAA
ATACAACCAAAGAATATCTTAAACTCCAAGAAGAATATAATCAACTTTTAGGTAAAAAAC
CAAAAACTCAAAAGAAAGATGATTAATCATCTTAAAAAT----------
Length of 5' end seq. 399
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -