>SLH252 (SLH252Q) /CSM/SL/SLH2-C/SLH252Q.Seq.d/
ACAGAATGGGTAAAGTACATGGTGGTTTGAATCGTGCTGGTAAAGTCAGAAACGCTACTC
CAAAGAAAGATAAGGAAGAAAAAAGAAAACCAAAGGTTGGTCGTGCTAAAAAGATAATGA
TCTTCAACAGACGTAACGTCGCCGCCGTCGCTGGTTTCXXXXXXXXXX

RMGKVHGGLNRAGKVRNATPKKDKEEKRKPKVGRAKKIMIFNRRNVAAVAG---

Frame A:
tewvkymvv*ivlvksetllqrkirkkkenqrlvvlkr**sstdvtsppslv---


Frame B:
qng*stwwfescw*sqkrysker*grkkktkgwsc*kdndlqqt*rrrrrwf---


Frame C:
RMGKVHGGLNRAGKVRNATPKKDKEEKRKPKVGRAKKIMIFNRRNVAAVAG---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH252 (SLH252Q) /CSM/SL/SLH2-C/SLH252Q.Seq.d/                        313   4e-85
VSK394 (VSK394Q) /CSM/VS/VSK3-D/VSK394Q.Seq.d/                        305   1e-82
VSK370 (VSK370Q) /CSM/VS/VSK3-C/VSK370Q.Seq.d/                        305   1e-82
VSK369 (VSK369Q) /CSM/VS/VSK3-C/VSK369Q.Seq.d/                        305   1e-82
VSK339 (VSK339Q) /CSM/VS/VSK3-B/VSK339Q.Seq.d/                        305   1e-82
VSK242 (VSK242Q) /CSM/VS/VSK2-B/VSK242Q.Seq.d/                        305   1e-82
VSK177 (VSK177Q) /CSM/VS/VSK1-D/VSK177Q.Seq.d/                        305   1e-82
VSJ657 (VSJ657Q) /CSM/VS/VSJ6-C/VSJ657Q.Seq.d/                        305   1e-82
VSJ648 (VSJ648Q) /CSM/VS/VSJ6-B/VSJ648Q.Seq.d/                        305   1e-82
VSJ528 (VSJ528Q) /CSM/VS/VSJ5-B/VSJ528Q.Seq.d/                        305   1e-82

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU062025) Dictyostelium discoideum slug cDNA, clone SLH252.      121   8e-44  2
(AU073979) Dictyostelium discoideum slug cDNA, clone SSJ149.      121   5e-43  2
(AU265218) Dictyostelium discoideum vegetative cDNA clone:VS...   121   5e-43  2
(AU264287) Dictyostelium discoideum vegetative cDNA clone:VS...   121   5e-43  2
(AU268198) Dictyostelium discoideum vegetative cDNA clone:VS...   121   5e-43  2
(AU266024) Dictyostelium discoideum vegetative cDNA clone:VS...   121   6e-43  2
(AU267594) Dictyostelium discoideum vegetative cDNA clone:VS...   121   6e-43  2
(AU265037) Dictyostelium discoideum vegetative cDNA clone:VS...   121   6e-43  2
(AU271029) Dictyostelium discoideum vegetative cDNA clone:VS...   121   6e-43  2
(AU270059) Dictyostelium discoideum vegetative cDNA clone:VS...   121   6e-43  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q556Y1) RecName: Full=40S ribosomal protein S30;  &AC116984_159...    73   3e-12
EF134352_1(EF134352|pid:none) Oxyrrhis marina isolate Om-5p-27 r...    49   7e-05
DQ864968_1(DQ864968|pid:none) Pfiesteria piscicida clone Ppi-126...    48   1e-04
AC138087_6(AC138087|pid:none) Medicago truncatula clone mth2-22p...    48   1e-04
EU975114_1(EU975114|pid:none) Zea mays clone 469296 unknown mRNA.      48   1e-04
AP002854_6(AP002854|pid:none) Oryza sativa Japonica Group genomi...    48   1e-04
EU955358_1(EU955358|pid:none) Zea mays clone 1529338 40S ribosom...    47   2e-04
BX538352_55(BX538352|pid:none) Cryptosporidium parvum chromosome...    45   0.001
AY857488_1(AY857488|pid:none) Suberites domuncula S30-ubiquitin-...    44   0.001
AM910986_12(AM910986|pid:none) Plasmodium knowlesi strain H chro...    44   0.001

 psg: 0.57  gvh: 0.24  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.04
 nuc: 0.43  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: cytoplasmic
	  4.0 %: plasma membrane

>> prediction for SLH252 is nuc

>SLH252F.Seq
ACAGAATGGGTAAAGTACATGGTGGTTTGAATCGTGCTGGTAAAGTCAGAAACGCTACTC
CAAAGAAAGATAAGGAAGAAAAAAGAAAACCAAAGGTTGGTCGTGCTAAAAAGATAATGA
TCTTCAACAGACGTAACGTCGCCGCCGTCGCTGGTTTC----------