NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH249
Library SL
(Link to library)
Clone ID SLH249
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04170-1
Original site URL
Representative seq. ID SLH249E
(Link to Original site)
Representative DNA sequence 
>SLH249 (SLH249Q) /CSM/SL/SLH2-C/SLH249Q.Seq.d/
GCAAAAGGAATGAATTATCTACATGGTTGGACTCCACCCATTCTTCATCGTGATTTATCC
TCAAGAAACATTTTATTGGATCACAACATCGATCCAAAGAATCCTGTAGTTTCCTCAAGA
CAAGATATTAAATGTAAGATCTCTGATTTTGGTCTAAGTAGATTAAAGATGGAACAAGCC
TCTCAAATGACTCAATCGGTTGGTTGTATTCCCTACATGGCACCAGAGGTTTTCAAAGGC
GATAGTAATAGTGAAAAGAGTGATGTTTACTCCTATGGCATGGTTTTGTTTGAACTATTA
ACCTCTGATGAACCTCAACAAGATATGAAACCAATGAAAATGGCTCACTTGGCTGCTTAT
GAATCTTATCGTCCTCCAATTCCATTAACTACCTCTTCCAAGTGGAAAGAAATTCTAACT
CAATGTTGGGATTCTAATCCTGATAGTCGTCCAACCTTTAAACAAATCATTGTTCATCTC
AAAGAAATGGAAGATCAAGGTGTATCTTCTTTTGCATCTGTACCTGTTCAAACTATTGAT
ACTGGTGTTTATGCTTAATTTTTTTTTTATAATTAAAAAAAAAAAAAAACAAAACAAAAA
ANAAAAATAATAATAAATATAATCACTTCAACTTGTAAACAATTTAAATTAATAATAATA
ATTAATAAATAATGATAATTATTGATAAA
sequence update 1998. 7. 2
Translated Amino Acid sequence 
AKGMNYLHGWTPPILHRDLSSRNILLDHNIDPKNPVVSSRQDIKCKISDFGLSRLKMEQA
SQMTQSVGCIPYMAPEVFKGDSNSEKSDVYSYGMVLFELLTSDEPQQDMKPMKMAHLAAY
ESYRPPIPLTTSSKWKEILTQCWDSNPDSRPTFKQIIVHLKEMEDQGVSSFASVPVQTID
TGVYA*fffyn*kkkktkqkxkiiiniitstckqfkliiiink***lli
Translated Amino Acid sequence (All Frames) 
Frame A:
AKGMNYLHGWTPPILHRDLSSRNILLDHNIDPKNPVVSSRQDIKCKISDFGLSRLKMEQA
SQMTQSVGCIPYMAPEVFKGDSNSEKSDVYSYGMVLFELLTSDEPQQDMKPMKMAHLAAY
ESYRPPIPLTTSSKWKEILTQCWDSNPDSRPTFKQIIVHLKEMEDQGVSSFASVPVQTID
TGVYA*fffyn*kkkktkqkxkiiiniitstckqfkliiiink***lli


Frame B:
qke*iiymvglhpffiviypqetfywittsiqril*fpqdkilnvrslilv*vd*rwnkp
lk*lnrlvvfptwhqrfskaivivkrvmftpmawfclny*plmnlnki*nq*kwltwllm
nlivlqfh*lplpsgkkf*lnvgililivvqplnkslfiskkwkikvylllhlylfklli
lvfmlnfffiikkkkkqnkkxk***i*slqlvnnln****linndny**


Frame C:
krnelstwldsthsss*filkkhfigsqhrskescsflktry*m*dl*fwsk*ikdgtsl
sndsigwlyslhgtrgfqrr****ke*clllwhgfv*tinl**tstryetnengslgcl*
ilsssnsinylfqvernsnsmlgf*s**ssnl*tnhcssqrngrsrciffcictcsny*y
wclcliffl*lkkkknktkxknnnkynhfnl*ti*innnn**imiiidk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH249 (SLH249Q) /CSM/SL/SLH2-C/SLH249Q.Seq.d/                       1106   0.0
VHL231 (VHL231Q) /CSM/VH/VHL2-B/VHL231Q.Seq.d/                         42   0.011
VHK104 (VHK104Q) /CSM/VH/VHK1-A/VHK104Q.Seq.d/                         42   0.011
VHI887 (VHI887Q) /CSM/VH/VHI8-D/VHI887Q.Seq.d/                         42   0.011
VHD504 (VHD504Q) /CSM/VH/VHD5-A/VHD504Q.Seq.d/                         42   0.011
VHA413 (VHA413Q) /CSM/VH/VHA4-A/VHA413Q.Seq.d/                         42   0.011
CHF507 (CHF507Q) /CSM/CH/CHF5-A/CHF507Q.Seq.d/                         42   0.011
SSL361 (SSL361Q) /CSM/SS/SSL3-C/SSL361Q.Seq.d/                         36   0.68
CHD713 (CHD713Q) /CSM/CH/CHD7-A/CHD713Q.Seq.d/                         36   0.68
VSK224 (VSK224Q) /CSM/VS/VSK2-A/VSK224Q.Seq.d/                         34   2.7
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039243) Dictyostelium discoideum slug cDNA, clone SLH249.     1138   0.0    1
(U32174) Dictyostelium discoideum spore lysis A (splA) gene,...  1130   0.0    1
(M33785) D.discoideum protein-tyrosine kinase-1 (DPYK1) mRNA...  1106   0.0    1
(CD525170) kw13f02.y1 Strongyloides ratti PA female naive pA...    42   0.003  2
(CD526006) kw28g08.y1 Strongyloides ratti PA female naive pA...    42   0.004  2
(CD524923) kw08d07.y1 Strongyloides ratti PA female naive pA...    42   0.004  2
(FC820023) Sr_pAMT7_016h20_T7 S. ratti mixed stage pAMP Stro...    42   0.006  2
(FC820213) Sr_pAMT7_017a19_T7 S. ratti mixed stage pAMP Stro...    42   0.006  2
(FC820623) Sr_pAMT7_018e02_T7 S. ratti mixed stage pAMP Stro...    42   0.006  2
(AM451638) Vitis vinifera contig VV78X024026.9, whole genome...    42   0.037  4
dna update 2009. 6. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P18160) RecName: Full=Dual specificity protein kinase dpyk1;   ...   381   e-105
T18276(T18276;A35670) protein-tyrosine kinase (EC 2.7.1.112) 1 -...   379   e-104
(Q54N73) RecName: Full=Seven transmembrane domain-containing tyr...   147   4e-34
BT084504_1(BT084504|pid:none) Zea mays full-length cDNA clone ZM...   134   3e-30
AC159538_19(AC159538|pid:none) Medicago truncatula clone mth2-48...   131   2e-29
(Q54XY6) RecName: Full=Probable serine/threonine-protein kinase ...   127   4e-28
AY059769_1(AY059769|pid:none) Arabidopsis thaliana putative prot...   126   7e-28
FB918044_1(FB918044|pid:none) Sequence 137317 from Patent WO2008...   126   7e-28
DQ508127_1(DQ508127|pid:none) Synthetic construct flag-tagged pr...   126   7e-28
AM435166_2(AM435166|pid:none) Vitis vinifera contig VV78X053282....   125   1e-27
protein update 2009. 7. 5
PSORT 

 psg: 0.82  gvh: 0.31  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SLH249 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLH249E
Full length Seq. 
>SLH249E.Seq
GCAAAAGGAATGAATTATCTACATGGTTGGACTCCACCCATTCTTCATCGTGATTTATCC
TCAAGAAACATTTTATTGGATCACAACATCGATCCAAAGAATCCTGTAGTTTCCTCAAGA
CAAGATATTAAATGTAAGATCTCTGATTTTGGTCTAAGTAGATTAAAGATGGAACAAGCC
TCTCAAATGACTCAATCGGTTGGTTGTATTCCCTACATGGCACCAGAGGTTTTCAAAGGC
GATAGTAATAGTGAAAAGAGTGATGTTTACTCCTATGGCATGGTTTTGTTTGAACTATTA
ACCTCTGATGAACCTCAACAAGATATGAAACCAATGAAAATGGCTCACTTGGCTGCTTAT
GAATCTTATCGTCCTCCAATTCCATTAACTACCTCTTCCAAGTGGAAAGAAATTCTAACT
CAATGTTGGGATTCTAATCCTGATAGTCGTCCAACCTTTAAACAAATCATTGTTCATCTC
AAAGAAATGGAAGATCAAGGTGTATCTTCTTTTGCATCTGTACCTGTTCAAACTATTGAT
ACTGGTGTTTATGCTTAATTTTTTTTTTATAATTAAAAAAAAAAAAAAACAAAACAAAAA
ANAAAAATAATAATAAATATAATCACTTCAACTTGTAAACAATTTAAATTAATAATAATA
ATTAATAAATAATGATAATTATTGATAAA
Length of full length seq. 689