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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH247
Library SL
(Link to library)
Clone ID SLH247
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16280-1
Original site URL
Representative seq. ID SLH247Z
(Link to Original site)
Representative DNA sequence 
>SLH247 (SLH247Q) /CSM/SL/SLH2-B/SLH247Q.Seq.d/
XXXXXXXXXXACGTGCTTTCACCACCCCACTCTCTGCTCAAGTCGTCGATTCTGCCTCTG
GTCTCTTAATGCCATTCTATGATGCTGACAATTCAATTTTATACCTTGCTGGTAAAGGTG
ATGGTAACATCAGATACTACGAATTGGTCGATGAATCACCATACATTCATTTCTTAAGTG
AATTCAAATCTGCCACCCCACAAAGAGGTCTTTGCTTCTTACCAAAGAGATGTCTCAACA
CCTCTGAATGTGAAATCGCTAGAGGTCTCAAAGTTACTCCATTCACCGTTGAACCAATCT
CATTCCGTGTACCAAGAAAATCTGATATCTTCCAAGACGATATCTACCCAGATACCTACG
CTGGTGAACCATCACTCACTGCCGAACAATGGGTTTCAGGTACCAATGCTGAACCAAAGA
CTGTTAGTTTAGCTGGTGGTTTTGTCAAAAAAGCTTCAGCTGTTGAATTCAAACCAGTCG
TTCAAGTTCAAGAAGGTCCAAAGAATGAAAAAGAACTCCGTGAAGAATACGAAAAATTAA
AGATTCGTGTTGCTTACTTAGAATCTGAAATCGTTAAAAAGGATGCCAAAATCAAAGAAC
TCACCAACTAAATTAATAATTTTCATTCTTAAATTGTATTAA
sequence update 1998. 7. 2
Translated Amino Acid sequence 
---RAFTTPLSAQVVDSASGLLMPFYDADNSILYLAGKGDGNIRYYELVDESPYIHFLSE
FKSATPQRGLCFLPKRCLNTSECEIARGLKVTPFTVEPISFRVPRKSDIFQDDIYPDTYA
GEPSLTAEQWVSGTNAEPKTVSLAGGFVKKASAVEFKPVVQVQEGPKNEKELREEYEKLK
IRVAYLESEIVKKDAKIKELTN*innfhs*ivl
Translated Amino Acid sequence (All Frames) 
Frame A:
---RAFTTPLSAQVVDSASGLLMPFYDADNSILYLAGKGDGNIRYYELVDESPYIHFLSE
FKSATPQRGLCFLPKRCLNTSECEIARGLKVTPFTVEPISFRVPRKSDIFQDDIYPDTYA
GEPSLTAEQWVSGTNAEPKTVSLAGGFVKKASAVEFKPVVQVQEGPKNEKELREEYEKLK
IRVAYLESEIVKKDAKIKELTN*innfhs*ivl


Frame B:
---vlspphsllkssilplvs*chsmmltiqfytllvkvmvtsdttnwsmnhhtfis*vn
snlpphkevfasyqrdvstplnvkslevskllhsplnqshsvyqenlissktistqiptl
vnhhslpnngfqvpmlnqrllv*lvvlskklqllnsnqsfkfkkvqrmkknsvkntkn*r
fvllt*nlkslkrmpksknsptkliifilkly*


Frame C:
---cfhhptlcssrrfclwslnail*c*qfnfipcw*r*w*hqilrigr*itihsflk*i
qichptkrsllltkemsqhl*m*nr*rsqsysihr*tnlipctkki*ylprrylprylrw
*tithcrtmgfryqc*tkdc*fswwfcqksfsc*iqtsrsssrrske*krtp*rirkikd
sccllri*nr*kgcqnqrthqln**fsflnci
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH247 (SLH247Q) /CSM/SL/SLH2-B/SLH247Q.Seq.d/                       1253   0.0
SLA487 (SLA487Q) /CSM/SL/SLA4-D/SLA487Q.Seq.d/                       1253   0.0
SLH850 (SLH850Q) /CSM/SL/SLH8-C/SLH850Q.Seq.d/                       1251   0.0
SLE542 (SLE542Q) /CSM/SL/SLE5-B/SLE542Q.Seq.d/                       1251   0.0
SLE465 (SLE465Q) /CSM/SL/SLE4-C/SLE465Q.Seq.d/                       1251   0.0
SLA132 (SLA132Q) /CSM/SL/SLA1-B/SLA132Q.Seq.d/                       1251   0.0
SLG620 (SLG620Q) /CSM/SL/SLG6-A/SLG620Q.Seq.d/                       1249   0.0
SLG148 (SLG148Q) /CSM/SL/SLG1-B/SLG148Q.Seq.d/                       1249   0.0
FC-AI14 (FC-AI14Q) /CSM/FC/FC-AI/FC-AI14Q.Seq.d/                     1249   0.0
AFE648 (AFE648Q) /CSM/AF/AFE6-B/AFE648Q.Seq.d/                       1239   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU052274) Dictyostelium discoideum slug cDNA, clone SLA487.     1253   0.0    1
(AU039242) Dictyostelium discoideum slug cDNA, clone SLH247.     1253   0.0    1
(AU052156) Dictyostelium discoideum slug cDNA, clone SLA132.     1251   0.0    1
(AU039474) Dictyostelium discoideum slug cDNA, clone SLH850.     1251   0.0    1
(AU034998) Dictyostelium discoideum slug cDNA, clone SLE465.     1251   0.0    1
(AU034819) Dictyostelium discoideum slug cDNA, clone SLE542.     1251   0.0    1
(AU284287) Dictyostelium discoideum gamete cDNA clone:FC-AI1...  1249   0.0    1
(AU039866) Dictyostelium discoideum slug cDNA, clone SLG620.     1249   0.0    1
(AU039667) Dictyostelium discoideum slug cDNA, clone SLG148.     1249   0.0    1
(X61480) Dictyostelium discoideum mRNA for coronin.              1245   0.0    1
dna update 2009. 6. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S18663(S18663) coronin - slime mold (Dictyostelium discoideum)  ...   363   2e-99
AY525781_1(AY525781|pid:none) Acanthamoeba healyi coronin mRNA, ...   192   9e-48
(Q6QEF8) RecName: Full=Coronin-6;                                     171   2e-41
AF447884_1(AF447884|pid:none) Homo sapiens PP1782 mRNA, complete...   171   2e-41
AF447885_1(AF447885|pid:none) Homo sapiens PP1881 mRNA, complete...   171   2e-41
AF140359_1(AF140359|pid:none) Rattus norvegicus coronin relative...   171   2e-41
(Q920J3) RecName: Full=Coronin-6;  &BC098656_1(BC098656|pid:none)     171   2e-41
AK096431_1(AK096431|pid:none) Homo sapiens cDNA FLJ39112 fis, cl...   170   3e-41
AB070895_1(AB070895|pid:none) Mus musculus Coro6 mRNA for coroni...   169   6e-41
BC141247_1(BC141247|pid:none) Mus musculus coronin 6, mRNA (cDNA...   169   6e-41
protein update 2009. 6. 4
PSORT 

 psg: 0.88  gvh: 0.46  alm: 0.46  top: 0.20  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 24.0 %: extracellular, including cell wall
	 16.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SLH247 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLH247Z
3' end seq. 
>SLH247Z.Seq
----------ACGTGCTTTCACCACCCCACTCTCTGCTCAAGTCGTCGATTCTGCCTCTG
GTCTCTTAATGCCATTCTATGATGCTGACAATTCAATTTTATACCTTGCTGGTAAAGGTG
ATGGTAACATCAGATACTACGAATTGGTCGATGAATCACCATACATTCATTTCTTAAGTG
AATTCAAATCTGCCACCCCACAAAGAGGTCTTTGCTTCTTACCAAAGAGATGTCTCAACA
CCTCTGAATGTGAAATCGCTAGAGGTCTCAAAGTTACTCCATTCACCGTTGAACCAATCT
CATTCCGTGTACCAAGAAAATCTGATATCTTCCAAGACGATATCTACCCAGATACCTACG
CTGGTGAACCATCACTCACTGCCGAACAATGGGTTTCAGGTACCAATGCTGAACCAAAGA
CTGTTAGTTTAGCTGGTGGTTTTGTCAAAAAAGCTTCAGCTGTTGAATTCAAACCAGTCG
TTCAAGTTCAAGAAGGTCCAAAGAATGAAAAAGAACTCCGTGAAGAATACGAAAAATTAA
AGATTCGTGTTGCTTACTTAGAATCTGAAATCGTTAAAAAGGATGCCAAAATCAAAGAAC
TCACCAACTAAATTAATAATTTTCATTCTTAAATTGTATTAA
Length of 3' end seq. 632
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -