SLH243
Library SL
(Link to library)
Clone ID SLH243
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15469-1
Original site URL
Representative seq. ID SLH243P
(Link to Original site)
Representative DNA sequence
>SLH243 (SLH243Q) /CSM/SL/SLH2-B/SLH243Q.Seq.d/
ATTCTTACAAATAAATAATTTTAAATATATATAAAATAAACAATGAAAGTTTTATCATTC
CTCTGTGTTTTATTAGTTAGCGTTGCTACTGCCAAACAACAATTTTCAGAATTACAATAT
AGAAATGCTTTCACCGATTGGATGATTACCCACCAAAAGAGTTACACCTCAGAAGAGTTT
GGTGCCCGTTACAATATCTTCAAAGCCAATATGGATTACGTTCAACAATGGAATTCAAAA
GGTAGTGAAACCGTTTTAGGTTTAAATAACTTTGCCGATATTACCAATGAAGAATATAGA
AACACTTATTTAGGTACTAAATTCGATGCTTCATCTTTAATTGGTACTCAAGAAGAGAAA
GTTTTCACAACTTCATCAGCTGCTTCAAAAGATTGGAGAAGTGAAGGTGCTGTTACCCCA
GTCAAAAATCAAGGTCXXXXXXXXXXCAGTTGCAATTGATGCCAGTCACCAAAGTTTCCA
ACTCTATACTTCTGGTATTTACTATGAACCAGAATGTTCAAGTGAAAACTTGGATCATGG
TGTTTTAGCTGTTGGTTATGGTTCAGGTTCAGGTTCATCATCTGGTCAATCATCTGGTCA
ATCATCTGGTAATTTAAGTGCCAGCAGTTCAAATGAATATTGGATCGTTAAAAACTCATG
GGGTACATCATGGGGTATCGAAGGTTACATTTTAATGAGCAGAAATAGAGATAATAACTG
TGGTATTGCCAGTTCTGCAAGTTTCCCAGTAGTATAAATCAAATTAACAATTTAGATCAT
ATATATTTTATAATTTTTATAAAAAAAGAATAATA
sequence update 1999. 2. 9
Translated Amino Acid sequence
iltnk*f*iyik*TMKVLSFLCVLLVSVATAKQQFSELQYRNAFTDWMITHQKSYTSEEF
GARYNIFKANMDYVQQWNSKGSETVLGLNNFADITNEEYRNTYLGTKFDASSLIGTQEEK
VFTTSSAASKDWRSEGAVTPVKNQG---

---VAIDASHQSFQLYTSGIYYEPECSSENLDHGVLAVGYGSGSGSSSGQSSGQSSGNLS
ASSSNEYWIVKNSWGTSWGIEGYILMSRNRDNNCGIASSASFPVV*iklti*iiyil*fl
*kknn


Translated Amino Acid sequence (All Frames)
Frame A:
iltnk*f*iyik*TMKVLSFLCVLLVSVATAKQQFSELQYRNAFTDWMITHQKSYTSEEF
GARYNIFKANMDYVQQWNSKGSETVLGLNNFADITNEEYRNTYLGTKFDASSLIGTQEEK
VFTTSSAASKDWRSEGAVTPVKNQG---

---qlqlmpvtkvsnsillvftmnqnvqvktwimvf*llvmvqvqvhhlvnhlvnhlvi*
vpavqmnigslkthgvhhgvskvtf**aeieiitvvlpvlqvsq*yksn*qfrsyifynf
ykkrii

Frame B:
flqinnfkyi*nkq*kfyhssvfy*lalllpnnnfqnyniemlspig*lptkrvtpqksl
vpvtisskpiwitfnngiqkvvkpf*v*itlpilpmknietli*vlnsmlhl*lvlkkrk
fsqlhqllqkigevkvllpqskikv---

---scn*cqspkfptlyfwyll*trmfk*klgswcfscwlwfrfrfiiwsiiwsiiw*fk
cqqfk*ildr*klmgyimgyrrlhfneqk*r**lwycqfckfpssinqinnldhiyfiif
ikke*

Frame C:
syk*iilniykinnesfiiplcfis*rcycqttifriti*kcfhrlddyppkelhlrrvw
cplqylqsqyglrstmefkr**nrfrfk*lcryyq*ri*khlfry*ircfifnwysrres
fhnfiscfkrlek*rccypsqksr---

---VAIDASHQSFQLYTSGIYYEPECSSENLDHGVLAVGYGSGSGSSSGQSSGQSSGNLS
ASSSNEYWIVKNSWGTSWGIEGYILMSRNRDNNCGIASSASFPVV*iklti*iiyil*fl
*kknn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFN343 (VFN343Q) /CSM/VF/VFN3-B/VFN343Q.Seq.d/ 864 0.0
VFM879 (VFM879Q) /CSM/VF/VFM8-D/VFM879Q.Seq.d/ 864 0.0
VFL316 (VFL316Q) /CSM/VF/VFL3-A/VFL316Q.Seq.d/ 864 0.0
VFK528 (VFK528Q) /CSM/VF/VFK5-B/VFK528Q.Seq.d/ 864 0.0
VFK239 (VFK239Q) /CSM/VF/VFK2-B/VFK239Q.Seq.d/ 864 0.0
VFJ643 (VFJ643Q) /CSM/VF/VFJ6-B/VFJ643Q.Seq.d/ 864 0.0
VFJ559 (VFJ559Q) /CSM/VF/VFJ5-C/VFJ559Q.Seq.d/ 864 0.0
VFJ117 (VFJ117Q) /CSM/VF/VFJ1-A/VFJ117Q.Seq.d/ 864 0.0
VFI118 (VFI118Q) /CSM/VF/VFI1-A/VFI118Q.Seq.d/ 864 0.0
VFH866 (VFH866Q) /CSM/VF/VFH8-C/VFH866Q.Seq.d/ 864 0.0

own update 2001.11.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 785 0.0 3
(L36205) Dictyostelium discoideum cysteine proteinase CP5 mR... 753 0.0 2
(BJ432538) Dictyostelium discoideum cDNA clone:ddv19a05, 3' ... 664 0.0 2
(BJ434358) Dictyostelium discoideum cDNA clone:ddv16k16, 3' ... 702 0.0 4
(AU076333) Dictyostelium discoideum slug cDNA, clone SSA605. 785 0.0 1
(AU062023) Dictyostelium discoideum slug cDNA, clone SLH243. 785 0.0 1
(BJ416791) Dictyostelium discoideum cDNA clone:ddv27f11, 5' ... 785 0.0 1
(BJ416600) Dictyostelium discoideum cDNA clone:ddv26n20, 5' ... 785 0.0 1
(BJ415639) Dictyostelium discoideum cDNA clone:ddv23p03, 5' ... 785 0.0 1
(BJ415491) Dictyostelium discoideum cDNA clone:ddv22b21, 5' ... 785 0.0 1
dna update 2009. 6. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54640) RecName: Full=Cysteine proteinase 5; EC=3.4.22... 241 3e-62
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot... 234 3e-60
L36204_1(L36204|pid:none) Dictyostelium discoideum cysteine prot... 188 2e-46
(Q94503) RecName: Full=Cysteine proteinase 6; EC=3.4.22... 183 5e-45
(Q94504) RecName: Full=Cysteine proteinase 7; EC=3.4.22... 179 9e-44
(P04989) RecName: Full=Cysteine proteinase 2; EC=3.4.22... 136 7e-31
AC117076_20(AC117076|pid:none) Dictyostelium discoideum chromoso... 120 4e-26
EZ000236_1(EZ000236|pid:none) TSA: Amblyomma americanum Contig61... 112 2e-23
EF488012_1(EF488012|pid:none) Dermestes frischii digestive cyste... 111 2e-23
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ... 110 5e-23
protein update 2009. 6. 4
PSORT

psg: 0.96 gvh: 0.83 alm: 0.56 top: 0.40 tms: 0.00 mit: 0.33 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: extracellular, including cell wall
12.0 %: mitochondrial
8.0 %: vacuolar
8.0 %: endoplasmic reticulum
4.0 %: cytoplasmic
4.0 %: Golgi

>> prediction for SLH243 is exc

5' end seq. ID SLH243F
5' end seq.
>SLH243F.Seq
ATTCTTACAAATAAATAATTTTAAATATATATAAAATAAACAATGAAAGTTTTATCATTC
CTCTGTGTTTTATTAGTTAGCGTTGCTACTGCCAAACAACAATTTTCAGAATTACAATAT
AGAAATGCTTTCACCGATTGGATGATTACCCACCAAAAGAGTTACACCTCAGAAGAGTTT
GGTGCCCGTTACAATATCTTCAAAGCCAATATGGATTACGTTCAACAATGGAATTCAAAA
GGTAGTGAAACCGTTTTAGGTTTAAATAACTTTGCCGATATTACCAATGAAGAATATAGA
AACACTTATTTAGGTACTAAATTCGATGCTTCATCTTTAATTGGTACTCAAGAAGAGAAA
GTTTTCACAACTTCATCAGCTGCTTCAAAAGATTGGAGAAGTGAAGGTGCTGTTACCCCA
GTCAAAAATCAAGGTC----------
Length of 5' end seq. 436
3' end seq. ID SLH243Z
3' end seq.
>SLH243Z.Seq
----------CAGTTGCAATTGATGCCAGTCACCAAAGTTTCCAACTCTATACTTCTGGT
ATTTACTATGAACCAGAATGTTCAAGTGAAAACTTGGATCATGGTGTTTTAGCTGTTGGT
TATGGTTCAGGTTCAGGTTCATCATCTGGTCAATCATCTGGTCAATCATCTGGTAATTTA
AGTGCCAGCAGTTCAAATGAATATTGGATCGTTAAAAACTCATGGGGTACATCATGGGGT
ATCGAAGGTTACATTTTAATGAGCAGAAATAGAGATAATAACTGTGGTATTGCCAGTTCT
GCAAGTTTCCCAGTAGTATAAATCAAATTAACAATTTAGATCATATATATTTTATAATTT
TTATAAAAAAAGAATAATA
Length of 3' end seq. 369
Connected seq. ID SLH243P
Connected seq.
>SLH243P.Seq
ATTCTTACAAATAAATAATTTTAAATATATATAAAATAAACAATGAAAGTTTTATCATTC
CTCTGTGTTTTATTAGTTAGCGTTGCTACTGCCAAACAACAATTTTCAGAATTACAATAT
AGAAATGCTTTCACCGATTGGATGATTACCCACCAAAAGAGTTACACCTCAGAAGAGTTT
GGTGCCCGTTACAATATCTTCAAAGCCAATATGGATTACGTTCAACAATGGAATTCAAAA
GGTAGTGAAACCGTTTTAGGTTTAAATAACTTTGCCGATATTACCAATGAAGAATATAGA
AACACTTATTTAGGTACTAAATTCGATGCTTCATCTTTAATTGGTACTCAAGAAGAGAAA
GTTTTCACAACTTCATCAGCTGCTTCAAAAGATTGGAGAAGTGAAGGTGCTGTTACCCCA
GTCAAAAATCAAGGTC----------CAGTTGCAATTGATGCCAGTCACCAAAGTTTCCA
ACTCTATACTTCTGGTATTTACTATGAACCAGAATGTTCAAGTGAAAACTTGGATCATGG
TGTTTTAGCTGTTGGTTATGGTTCAGGTTCAGGTTCATCATCTGGTCAATCATCTGGTCA
ATCATCTGGTAATTTAAGTGCCAGCAGTTCAAATGAATATTGGATCGTTAAAAACTCATG
GGGTACATCATGGGGTATCGAAGGTTACATTTTAATGAGCAGAAATAGAGATAATAACTG
TGGTATTGCCAGTTCTGCAAGTTTCCCAGTAGTATAAATCAAATTAACAATTTAGATCAT
ATATATTTTATAATTTTTATAAAAAAAGAATAATA
Length of connected seq. 805
Full length Seq ID -
Full length Seq. -
Length of full length seq. -