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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH242
Library SL
(Link to library)
Clone ID SLH242
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16343-1
Original site URL
Representative seq. ID SLH242Z
(Link to Original site)
Representative DNA sequence 
>SLH242 (SLH242Q) /CSM/SL/SLH2-B/SLH242Q.Seq.d/
XXXXXXXXXXACTTTTAGCATACAATTGTTCACCATCTTTCCATTGGAAACAACATTTGA
AACCAGATGAAATCGCCTCTTTCCAACGTCAACTCTCTGATTTGGGCTACAAGTTCCAAT
TCATCACTTTGGCTGGTTTCCATGCTCTCAATTTAACAATGTTTGAATTGGCAAAGGATT
ACAAAAAGAATGCTATGACTGCCTATGTAAATCTTCAAGAGAAAGAATTCTCTTTAGAAT
CTGAAGGCTATACTGCAACTAGACATCAACGTGAAGTAGGTACTGGTTACTTTGATCAAG
TTTCTCAAATTATCTCTGGTGGTCAATCTTCAACATTAGCTTTAGTAGGTTCAACTGAAG
AAGAACAATTTGATGAACATATTGAAAAGAAAAAGAAAGTTGCTCATAATAATAATGGAA
ATAATAAAAACAAAGCTGCAAGTGTTCAAAACTAATTAATTTTTATTTTAAAAAAAAATA
CAAACA
sequence update 1998. 7. 2
Translated Amino Acid sequence 
---LLAYNCSPSFHWKQHLKPDEIASFQRQLSDLGYKFQFITLAGFHALNLTMFELAKDY
KKNAMTAYVNLQEKEFSLESEGYTATRHQREVGTGYFDQVSQIISGGQSSTLALVGSTEE
EQFDEHIEKKKKVAHNNNGNNKNKAASVQN*lifilkkntn
Translated Amino Acid sequence (All Frames) 
Frame A:
---LLAYNCSPSFHWKQHLKPDEIASFQRQLSDLGYKFQFITLAGFHALNLTMFELAKDY
KKNAMTAYVNLQEKEFSLESEGYTATRHQREVGTGYFDQVSQIISGGQSSTLALVGSTEE
EQFDEHIEKKKKVAHNNNGNNKNKAASVQN*lifilkkntn


Frame B:
---f*htivhhlsignni*nqmksplsnvnsliwatssnsslwlvsmlsi*qclnwqrit
krml*lpm*ifkrknsl*nlkailqldinvk*vlvtlikflklslvvnlqh*l**vqlkk
nnlmnilkrkrklliiimeiiktklqvfktn*flf*kkiqt


Frame C:
---fsiqlftifplettfetr*nrlfptstl*fglqvpihhfgwfpcsqfnnv*igkglq
kecydclckssrerilfri*rlycn*tst*srywll*ssfsnylwwsifnisfsrfn*rr
ti**ty*kekescs***wk**kqsckcsklinfyfkkkyk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH629 (SSH629Q) /CSM/SS/SSH6-B/SSH629Q.Seq.d/                        910   0.0
SLI231 (SLI231Q) /CSM/SL/SLI2-B/SLI231Q.Seq.d/                        910   0.0
SLH242 (SLH242Q) /CSM/SL/SLH2-B/SLH242Q.Seq.d/                        910   0.0
SLG842 (SLG842Q) /CSM/SL/SLG8-B/SLG842Q.Seq.d/                        910   0.0
SLG223 (SLG223Q) /CSM/SL/SLG2-A/SLG223Q.Seq.d/                        910   0.0
SLE660 (SLE660Q) /CSM/SL/SLE6-C/SLE660Q.Seq.d/                        910   0.0
SLC678 (SLC678Q) /CSM/SL/SLC6-D/SLC678Q.Seq.d/                        910   0.0
SLB687 (SLB687Q) /CSM/SL/SLB6-D/SLB687Q.Seq.d/                        910   0.0
SLB235 (SLB235Q) /CSM/SL/SLB2-B/SLB235Q.Seq.d/                        910   0.0
AFM530 (AFM530Q) /CSM/AF/AFM5-B/AFM530Q.Seq.d/                        894   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...   910   0.0    1
(AU053250) Dictyostelium discoideum slug cDNA, clone SLI231.      910   0.0    1
(AU039960) Dictyostelium discoideum slug cDNA, clone SLG842.      910   0.0    1
(AU039705) Dictyostelium discoideum slug cDNA, clone SLG223.      910   0.0    1
(AU039240) Dictyostelium discoideum slug cDNA, clone SLH242.      910   0.0    1
(AU038372) Dictyostelium discoideum slug cDNA, clone SSH629.      910   0.0    1
(AU034900) Dictyostelium discoideum slug cDNA, clone SLE660.      910   0.0    1
(AU034319) Dictyostelium discoideum slug cDNA, clone SLC678.      910   0.0    1
(AU033980) Dictyostelium discoideum slug cDNA, clone SLB687.      910   0.0    1
(AU033618) Dictyostelium discoideum slug cDNA, clone SLB235.      910   0.0    1
dna update 2009. 6. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117076_17(AC117076|pid:none) Dictyostelium discoideum chromoso...   233   1e-60
AP006840_590(AP006840|pid:none) Symbiobacterium thermophilum IAM...   175   4e-43
BA000028_2404(BA000028|pid:none) Oceanobacillus iheyensis HTE831...   164   7e-40
BA000043_676(BA000043|pid:none) Geobacillus kaustophilus HTA426 ...   162   5e-39
CP000557_578(CP000557|pid:none) Geobacillus thermodenitrificans ...   161   8e-39
CP000909_3808(CP000909|pid:none) Chloroflexus aurantiacus J-10-f...   160   1e-38
CP000088_1375(CP000088|pid:none) Thermobifida fusca YX, complete...   160   2e-38
CP000804_4260(CP000804|pid:none) Roseiflexus castenholzii DSM 13...   158   5e-38
CP001341_705(CP001341|pid:none) Arthrobacter chlorophenolicus A6...   157   9e-38
CP000903_1014(CP000903|pid:none) Bacillus weihenstephanensis KBA...   157   9e-38
protein update 2009. 4.18
PSORT 

 psg: 0.80  gvh: 0.37  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SLH242 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLH242Z
3' end seq. 
>SLH242Z.Seq
----------ACTTTTAGCATACAATTGTTCACCATCTTTCCATTGGAAACAACATTTGA
AACCAGATGAAATCGCCTCTTTCCAACGTCAACTCTCTGATTTGGGCTACAAGTTCCAAT
TCATCACTTTGGCTGGTTTCCATGCTCTCAATTTAACAATGTTTGAATTGGCAAAGGATT
ACAAAAAGAATGCTATGACTGCCTATGTAAATCTTCAAGAGAAAGAATTCTCTTTAGAAT
CTGAAGGCTATACTGCAACTAGACATCAACGTGAAGTAGGTACTGGTTACTTTGATCAAG
TTTCTCAAATTATCTCTGGTGGTCAATCTTCAACATTAGCTTTAGTAGGTTCAACTGAAG
AAGAACAATTTGATGAACATATTGAAAAGAAAAAGAAAGTTGCTCATAATAATAATGGAA
ATAATAAAAACAAAGCTGCAAGTGTTCAAAACTAATTAATTTTTATTTTAAAAAAAAATA
CAAACA
Length of 3' end seq. 476
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -