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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH241
Library SL
(Link to library)
Clone ID SLH241
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15835-1
Original site URL
Representative seq. ID SLH241E
(Link to Original site)
Representative DNA sequence 
>SLH241 (SLH241Q) /CSM/SL/SLH2-B/SLH241Q.Seq.d/
GAAGTTGTTGAATCAAAGAACAAATTAGAAAACTACGCTTACACCGTTCGTAGCACCATT
AAAGACGATAAGATCGCCGCCAAATTATCAAAAGAAGATCGTAAGACCGTCGAAGAGAAA
TCCGATGAAGCCATCAACTGGTTACATGCCAACGACTCTGCCACTAAAGAAGAATACGAA
AAAGCCATGAAAGATTTAGAAGCTGTTTGTTCACCAATCATCTCTAAAGTTTACGGTCAA
CAAGGTGGTGAAAACCCAGGTAACTTCTCTGGTGCCAAAACCACTGAAGAAGATTTAGAT
TAAATTATTTAAATTCTTGTTCTATAATAAAAAAATATAATATAAAAAAAATTAAAAGCG
TTCCCTAAAAA
sequence update 1998. 7. 2
Translated Amino Acid sequence 
EVVESKNKLENYAYTVRSTIKDDKIAAKLSKEDRKTVEEKSDEAINWLHANDSATKEEYE
KAMKDLEAVCSPIISKVYGQQGGENPGNFSGAKTTEEDLD*ii*ilvl**knii*kklka
fpk
Translated Amino Acid sequence (All Frames) 
Frame A:
EVVESKNKLENYAYTVRSTIKDDKIAAKLSKEDRKTVEEKSDEAINWLHANDSATKEEYE
KAMKDLEAVCSPIISKVYGQQGGENPGNFSGAKTTEEDLD*ii*ilvl**knii*kklka
fpk


Frame B:
kllnqrtn*kttltpfvaplktirsppnyqkkivrpskrnpmkpstgympttlplkkntk
kp*ki*klfvhqsslkftvnkvvktqvtslvpkplkki*iklfkflfynkki*ykkn*kr
slk


Frame C:
sc*ikeqirklrlhrs*hh*rr*drrqiikrrs*drrreir*shqlvtcqrlch*rrirk
sherfrsclftnhl*slrstrw*kpr*llwcqnh*rrfrlnylnscsiikkynikkiksv
p*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHJ848 (VHJ848Q) /CSM/VH/VHJ8-B/VHJ848Q.Seq.d/                        638   0.0
VHI852 (VHI852Q) /CSM/VH/VHI8-C/VHI852Q.Seq.d/                        638   0.0
VHI539 (VHI539Q) /CSM/VH/VHI5-B/VHI539Q.Seq.d/                        638   0.0
VFK551 (VFK551Q) /CSM/VF/VFK5-C/VFK551Q.Seq.d/                        638   0.0
VFE160 (VFE160Q) /CSM/VF/VFE1-C/VFE160Q.Seq.d/                        638   0.0
SLH241 (SLH241Q) /CSM/SL/SLH2-B/SLH241Q.Seq.d/                        638   0.0
SLG425 (SLG425Q) /CSM/SL/SLG4-B/SLG425Q.Seq.d/                        638   0.0
SLD225 (SLD225Q) /CSM/SL/SLD2-B/SLD225Q.Seq.d/                        638   0.0
SLC367 (SLC367Q) /CSM/SL/SLC3-C/SLC367Q.Seq.d/                        638   0.0
SLC303 (SLC303Q) /CSM/SL/SLC3-A/SLC303Q.Seq.d/                        638   0.0
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...   640   0.0    2
(AU033417) Dictyostelium discoideum slug cDNA, clone SLA801.      640   0.0    2
(C22959) Dictyostelium discoideum gamete cDNA, clone FC-AG10.     640   0.0    2
(AU284446) Dictyostelium discoideum gamete cDNA clone:FC-AW0...   640   0.0    2
(AU052381) Dictyostelium discoideum slug cDNA, clone SLD225.      640   0.0    2
(AU039239) Dictyostelium discoideum slug cDNA, clone SLH241.      640   0.0    2
(AU034234) Dictyostelium discoideum slug cDNA, clone SLC303.      640   e-180  2
(AU034515) Dictyostelium discoideum slug cDNA, clone SLC367.      640   e-180  2
(AF025951) Dictyostelium discoideum heat-shock cognate prote...   640   e-180  1
(AU284481) Dictyostelium discoideum gamete cDNA clone:FC-AY2...   640   e-180  1
dna update 2009. 6. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q557E0) RecName: Full=Heat shock cognate 70 kDa protein 2;     ...   187   8e-47
AF025951_1(AF025951|pid:none) Dictyostelium discoideum heat-shoc...   187   8e-47
AF033852_1(AF033852|pid:none) Spinacia oleracea cytosolic heat s...   105   5e-22
(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   103   1e-21
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ...   103   1e-21
AB112816_1(AB112816|pid:none) Nicotiana benthamiana Hsp70 mRNA f...   102   3e-21
FB790106_1(FB790106|pid:none) Sequence 9379 from Patent WO200803...   102   4e-21
AY253326_1(AY253326|pid:none) Nicotiana tabacum heat shock prote...   102   5e-21
FB790104_1(FB790104|pid:none) Sequence 9377 from Patent WO200803...   102   5e-21
(P24629) RecName: Full=Heat shock cognate 70 kDa protein 1;  &FB...   100   2e-20
protein update 2009. 7. 5
PSORT 

 psg: 0.75  gvh: 0.20  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.10  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SLH241 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLH241E
Full length Seq. 
>SLH241E.Seq
GAAGTTGTTGAATCAAAGAACAAATTAGAAAACTACGCTTACACCGTTCGTAGCACCATT
AAAGACGATAAGATCGCCGCCAAATTATCAAAAGAAGATCGTAAGACCGTCGAAGAGAAA
TCCGATGAAGCCATCAACTGGTTACATGCCAACGACTCTGCCACTAAAGAAGAATACGAA
AAAGCCATGAAAGATTTAGAAGCTGTTTGTTCACCAATCATCTCTAAAGTTTACGGTCAA
CAAGGTGGTGAAAACCCAGGTAACTTCTCTGGTGCCAAAACCACTGAAGAAGATTTAGAT
TAAATTATTTAAATTCTTGTTCTATAATAAAAAAATATAATATAAAAAAAATTAAAAGCG
TTCCCTAAAAA
Length of full length seq. 371