>SLH239 (SLH239Q) /CSM/SL/SLH2-B/SLH239Q.Seq.d/
GTTTTGCAGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAANATATAGCAAAACAAAACAA
AATAAAATAAAATAAAACAAAAAAAAAATAAAATAATAAAATTAGAATTTTTTAGCACAG
ATAGAGTAATATTATAAACGAATTAGTAATATCAAAAAAAAAAAATAATAATTAAATATG
TCATCATTAAATAAATCAATTGGAAGTGTTACAGAATCACCAATTAATGTAGTAGTTCAT
AATTATGATAATAATGACCCAACAGAAACTAGACATGAAGTTCAAACTAAACATGGTAAA
TTAGTTTGTTTTCAAAAAATAGGTTCAAATCAATCACCAAATATGCCAACAATAATTTCT
TATCATGATTTGGGATTAAATCATACAACATGTTTTTCACCATTTTTCAATCATCCAAAT
ATGAATCATATTTTACCATATTTAAATATTATTCATATCGXXXXXXXXXX

vlqskkkkkkkkkxysktkqnkik*nkkkik**n*nflaqie*yykrisnikkkk**LNM
SSLNKSIGSVTESPINVVVHNYDNNDPTETRHEVQTKHGKLVCFQKIGSNQSPNMPTIIS
YHDLGLNHTTCFSPFFNHPNMNHILPYLNIIHI---

Frame A:
vlqskkkkkkkkkxysktkqnkik*nkkkik**n*nflaqie*yykrisnikkkk**LNM
SSLNKSIGSVTESPINVVVHNYDNNDPTETRHEVQTKHGKLVCFQKIGSNQSPNMPTIIS
YHDLGLNHTTCFSPFFNHPNMNHILPYLNIIHI---


Frame B:
fcrakkkkkkkkkxiakqnkik*nktkkk*nnkirif*hr*sniinelviskkknnn*ic
hh*inqlevlqnhqlm**fiimiimtqqkldmkfklnmvn*fvfkk*vqinhqicqq*fl
imiwd*iiqhvfhhfsiiqi*iifyhi*ilfi---


Frame C:
faeqkkkkkkkkxi*qnktk*nkikqkknkiikleffstdrvil*tn**yqkkkiiikyv
iik*inwkcyritn*csss*l****pnrn*t*ssn*tw*islfsknrfksitkyannnfl
s*fgiksynmfftifqsskyesyftifkyysy---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH239 (SLH239Q) /CSM/SL/SLH2-B/SLH239Q.Seq.d/                        640   0.0
VHO589 (VHO589Q) /CSM/VH/VHO5-D/VHO589Q.Seq.d/                         42   0.007
VHL277 (VHL277Q) /CSM/VH/VHL2-D/VHL277Q.Seq.d/                         42   0.007
VHK689 (VHK689Q) /CSM/VH/VHK6-D/VHK689Q.Seq.d/                         42   0.007
VHI374 (VHI374Q) /CSM/VH/VHI3-D/VHI374Q.Seq.d/                         42   0.007
VHF215 (VHF215Q) /CSM/VH/VHF2-A/VHF215Q.Seq.d/                         42   0.007
VHC675 (VHC675Q) /CSM/VH/VHC6-D/VHC675Q.Seq.d/                         42   0.007
VHB245 (VHB245Q) /CSM/VH/VHB2-B/VHB245Q.Seq.d/                         42   0.007
VHA755 (VHA755Q) /CSM/VH/VHA7-C/VHA755Q.Seq.d/                         42   0.007
VHA441 (VHA441Q) /CSM/VH/VHA4-B/VHA441Q.Seq.d/                         42   0.007

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU062022) Dictyostelium discoideum slug cDNA, clone SLH239.      583   0.0    2
(AL034558) Plasmodium falciparum MAL3P2.                           40   0.13   6
(AC220058) Solanum lycopersicum chromosome 11 clone C11HBa01...    48   0.30   1
(AC163763) Pan troglodytes BAC clone CH251-180G5 from chromo...    40   1.2    2
(AC110574) Mus musculus chromosome 3, clone RP23-324B15, com...    46   1.2    1
(DL201475) NOVEL THERAPEUTIC TARGETS IN CANCER.                    46   1.2    1
(CU915790) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.2    1
(EJ256683) 1095349014362 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.2    1
(EB920625) 12401580 ZF31 Danio rerio cDNA clone 3275207, mRN...    46   1.2    1
(FG293076) 1108770657463 New World Screwworm Larvae 9387 EST...    46   1.2    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55BX3) RecName: Full=NDRG-like protein;                             189   3e-47
BT045161_1(BT045161|pid:none) Salmo salar clone ssal-rgf-513-335...    59   5e-08
BT045858_1(BT045858|pid:none) Salmo salar clone ssal-rgf-534-339...    59   7e-08
(Q7ZWV3) RecName: Full=Protein NDRG1-B;          Short=xNDRG1-B;...    57   2e-07
CT573122_4(CT573122|pid:none) Zebrafish DNA sequence from clone ...    57   3e-07
AJ579376_1(AJ579376|pid:none) Danio rerio mRNA for N-myc downstr...    57   3e-07
AL031662_6(AL031662|pid:none) Human DNA sequence from clone RP3-...    57   3e-07
AF251054_1(AF251054|pid:none) Homo sapiens NDR3 mRNA, complete c...    56   3e-07
(Q641F2) Protein NDRG1-A (xNDRG1-A).  &BC082385_1(BC082385|pid:n...    56   3e-07
AL031662_5(AL031662|pid:none) Human DNA sequence from clone RP3-...    56   3e-07

 psg: 0.77  gvh: 0.36  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for SLH239 is cyt

>SLH239F.Seq
GTTTTGCAGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAANATATAGCAAAACAAAACAA
AATAAAATAAAATAAAACAAAAAAAAAATAAAATAATAAAATTAGAATTTTTTAGCACAG
ATAGAGTAATATTATAAACGAATTAGTAATATCAAAAAAAAAAAATAATAATTAAATATG
TCATCATTAAATAAATCAATTGGAAGTGTTACAGAATCACCAATTAATGTAGTAGTTCAT
AATTATGATAATAATGACCCAACAGAAACTAGACATGAAGTTCAAACTAAACATGGTAAA
TTAGTTTGTTTTCAAAAAATAGGTTCAAATCAATCACCAAATATGCCAACAATAATTTCT
TATCATGATTTGGGATTAAATCATACAACATGTTTTTCACCATTTTTCAATCATCCAAAT
ATGAATCATATTTTACCATATTTAAATATTATTCATATCG----------