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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH238
Library SL
(Link to library)
Clone ID SLH238
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04168-1
Original site URL
Representative seq. ID SLH238F
(Link to Original site)
Representative DNA sequence 
>SLH238 (SLH238Q) /CSM/SL/SLH2-B/SLH238Q.Seq.d/
CTGGTTTAGTACCAACTAATCCAACATCTGATGATATTAAAAAATCTAGATTTGATTTGG
GTATTGCTGATAATGTTGATATTCAATCTTTGAAAAGTACTAAAAAAGGAAGACTTTCAA
ATTATGTTTCAAATAGTTCACAATCTTCTGATTCTGATTATTCATCTTCTGATCATGAAG
ATGATGATTATATACCAAATTCAACTTTATCATCTTCCTCAACTTTACCAATTCCTTCAA
ATCCAAATTCAAATAAACGTTTAATTATATCACGTAATCCTAATCAGTTAAGTTCAACAA
ATGTAAATAATAATATTAATAATAGTGGTGGTAGTAGTAATAATAATAATAATAGTAATA
GTATAAATAATAATAATAATAATXXXXXXXXXX
sequence update 1999. 2. 9
Translated Amino Acid sequence 
GLVPTNPTSDDIKKSRFDLGIADNVDIQSLKSTKKGRLSNYVSNSSQSSDSDYSSSDHED
DDYIPNSTLSSSSTLPIPSNPNSNKRLIISRNPNQLSSTNVNNNINNSGGSSNNNNNSNS
INNNNN---
Translated Amino Acid sequence (All Frames) 
Frame A:
lv*yqliqhlmilknldliwvllimlifnl*kvlkkedfqimfqivhnlliliihllimk
mmiiyqiqlyhlpqlyqflqiqiqinv*lyhvilis*vqqm*iiiliivvvvviiiiivi
v*iiiii---


Frame B:
wfstn*sni**y*ki*i*fgyc**c*ysifeky*krktfklcfk*ftif*f*lfif*s*r
**lytkfnfiiflnftnsfkskfk*tfnyit*s*svkfnkck**y***ww**********
yk*****---


Frame C:
GLVPTNPTSDDIKKSRFDLGIADNVDIQSLKSTKKGRLSNYVSNSSQSSDSDYSSSDHED
DDYIPNSTLSSSSTLPIPSNPNSNKRLIISRNPNQLSSTNVNNNINNSGGSSNNNNNSNS
INNNNN---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH238 (SLH238Q) /CSM/SL/SLH2-B/SLH238Q.Seq.d/                        593   e-169
VHM364 (VHM364Q) /CSM/VH/VHM3-C/VHM364Q.Seq.d/                         42   0.006
AHP541 (AHP541Q) /CSM/AH/AHP5-B/AHP541Q.Seq.d/                         42   0.006
AHN709 (AHN709Q) /CSM/AH/AHN7-A/AHN709Q.Seq.d/                         42   0.006
AHA555 (AHA555Q) /CSM/AH/AHA5-C/AHA555Q.Seq.d/                         42   0.006
AFJ772 (AFJ772Q) /CSM/AF/AFJ7-C/AFJ772Q.Seq.d/                         42   0.006
VFG766 (VFG766Q) /CSM/VF/VFG7-C/VFG766Q.Seq.d/                         40   0.024
SSA193 (SSA193Q) /CSM/SS/SSA1-D/SSA193Q.Seq.d/                         40   0.024
SSA157 (SSA157Q) /CSM/SS/SSA1-C/SSA157Q.Seq.d/                         40   0.024
VSD253 (VSD253Q) /CSM/VS/VSD2-C/VSD253Q.Seq.d/                         38   0.096
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU062021) Dictyostelium discoideum slug cDNA, clone SLH238.      593   e-165  1
(AC137439) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    50   0.063  1
(AC112357) Rattus norvegicus clone CH230-14E21, *** SEQUENCI...    50   0.063  1
(AC095280) Rattus norvegicus clone CH230-10M5, WORKING DRAFT...    50   0.063  1
(DH702299) Rattus norvegicus DNA, BAC clone: RNB1-262P03, 3'...    50   0.063  1
(AC217134) MACACA MULATTA BAC clone CH250-265J16 from chromo...    46   0.98   1
(FM992695) Candida dubliniensis CD36 chromosome R, complete ...    46   0.98   1
(EJ645115) 1093012269812 Global-Ocean-Sampling_GS-29-01-01-1...    46   0.98   1
(EJ641805) 1093011953764 Global-Ocean-Sampling_GS-29-01-01-1...    46   0.98   1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    40   1.0    7
dna update 2009. 6. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54IE7) RecName: Full=Uncharacterized protein DDB_G0288805;          104   8e-22
CP000743_644(CP000743|pid:none) Methanococcus aeolicus Nankai-3,...    35   0.61
AM398681_1843(AM398681|pid:none) Flavobacterium psychrophilum JI...    34   1.4
AF250284_266(AF250284|pid:none) Amsacta moorei entomopoxvirus, c...    33   3.9
S72296(S72296) ribosomal protein L6 - Plasmodium falciparum plas...    33   3.9
AP008971_1501(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA...    32   6.7
AM180355_3227(AM180355|pid:none) Clostridium difficile 630 compl...    32   8.8
protein update 2009. 1.24
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar
	  8.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SLH238 is nuc
5' end seq. ID SLH238F
5' end seq. 
>SLH238F.Seq
CTGGTTTAGTACCAACTAATCCAACATCTGATGATATTAAAAAATCTAGATTTGATTTGG
GTATTGCTGATAATGTTGATATTCAATCTTTGAAAAGTACTAAAAAAGGAAGACTTTCAA
ATTATGTTTCAAATAGTTCACAATCTTCTGATTCTGATTATTCATCTTCTGATCATGAAG
ATGATGATTATATACCAAATTCAACTTTATCATCTTCCTCAACTTTACCAATTCCTTCAA
ATCCAAATTCAAATAAACGTTTAATTATATCACGTAATCCTAATCAGTTAAGTTCAACAA
ATGTAAATAATAATATTAATAATAGTGGTGGTAGTAGTAATAATAATAATAATAGTAATA
GTATAAATAATAATAATAATAAT----------
Length of 5' end seq. 383
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -