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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH231
Library SL
(Link to library)
Clone ID SLH231
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SLH231F
(Link to Original site)
Representative DNA sequence 
>SLH231 (SLH231Q) /CSM/SL/SLH2-B/SLH231Q.Seq.d/
AAAAAATGGACGGTGAAGATGTTCAAGCTTTAGTTATCGATAACGGTTCTGGTATGTGTA
AAGCCGGTTTTGCTGGTGATGATGCCCCACGTGCTGTTTTCCCATCAATTGTTGGTCGTC
CAAGACACACTGGTGTTATGGTCGGTATGGGTCAAAAGGATTCATATGTAGGTGATGAAG
CTCAATCAAAGAGAGGTATCTTAACCCTCAAATACCCAATTGAACACGGTATCGTTACCA
ACTGGGATGATATGGAAAAAATCTGGCATCATACTTTCTACAATGAACTCCGTGTTGCTC
CAGAAGAACACCCAGTTCTCTTAACCGAAGCCCCATTAAATCCAAAGGCCAACAGAGAAA
AAATGACTCAAATTATGTTTGAAACTTTCAACACCCCAGCCATGTACGTTGCCATTCAAA
CAGTCTTATCCXXXXXXXXXX
sequence update 1999. 2. 9
Translated Amino Acid sequence 
KMDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEA
QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
MTQIMFETFNTPAMYVAIQTVL---
Translated Amino Acid sequence (All Frames) 
Frame A:
kkwtvkmfkl*lsitvlvcvkpvllvmmphvlfshqllvvqdtlvlwsvwvkrihm*vmk
lnqrevs*psntqlntvslptgmiwkksgiilstmnsvllqkntqfs*pkph*iqrptek
k*lklclklstpqpctlpfkqsy---


Frame B:
kngr*rcssfsyr*rfwyv*srfcw**cptccfpincwsskthwcygrygskgficr**s
sikerylnpqipn*tryryqlg*ygknlasyflq*tpccsrrtpsslnrspikskgqqrk
ndsnyv*nfqhpshvrchsnsli---


Frame C:
KMDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEA
QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK
MTQIMFETFNTPAMYVAIQTVL---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH231 (SLH231Q) /CSM/SL/SLH2-B/SLH231Q.Seq.d/                        854   0.0
VFK656 (VFK656Q) /CSM/VF/VFK6-C/VFK656Q.Seq.d/                        839   0.0
VFK552 (VFK552Q) /CSM/VF/VFK5-C/VFK552Q.Seq.d/                        839   0.0
VFH284 (VFH284Q) /CSM/VF/VFH2-D/VFH284Q.Seq.d/                        839   0.0
VFE219 (VFE219Q) /CSM/VF/VFE2-A/VFE219Q.Seq.d/                        839   0.0
VFC813 (VFC813Q) /CSM/VF/VFC8-A/VFC813Q.Seq.d/                        839   0.0
SFB435 (SFB435Q) /CSM/SF/SFB4-B/SFB435Q.Seq.d/                        839   0.0
CFK117 (CFK117Q) /CSM/CF/CFK1-A/CFK117Q.Seq.d/                        839   0.0
SFB146 (SFB146Q) /CSM/SF/SFB1-B/SFB146Q.Seq.d/                        831   0.0
VFB476 (VFB476Q) /CSM/VF/VFB4-D/VFB476Q.Seq.d/                        829   0.0
own update 2002. 8.14
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU062019) Dictyostelium discoideum slug cDNA, clone SLH231.      854   0.0    1
(BJ415477) Dictyostelium discoideum cDNA clone:ddv22o14, 5' ...   839   0.0    1
(BJ415435) Dictyostelium discoideum cDNA clone:ddv22g13, 5' ...   839   0.0    1
(BJ412566) Dictyostelium discoideum cDNA clone:ddv9e06, 5' e...   839   0.0    1
(BJ411866) Dictyostelium discoideum cDNA clone:ddv6j04, 5' e...   839   0.0    1
(BJ387550) Dictyostelium discoideum cDNA clone:dds3f10, 5' e...   839   0.0    1
(BJ362248) Dictyostelium discoideum cDNA clone:ddc21a05, 5' ...   839   0.0    1
(BJ387558) Dictyostelium discoideum cDNA clone:dds3k11, 5' e...   831   0.0    1
(BJ411307) Dictyostelium discoideum cDNA clone:ddv3h20, 5' e...   829   0.0    1
(BJ411393) Dictyostelium discoideum cDNA clone:ddv4b08, 5' e...   821   0.0    1
dna update 2009. 6. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   293   1e-78
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   293   1e-78
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   291   4e-78
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   291   5e-78
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        287   9e-77
AY294154_1(AY294154|pid:none) Thecamoeba similis actin mRNA, com...   286   1e-76
(P02578) RecName: Full=Actin-1;  &ATAX(A92886;A03004) &V00002_1(...   286   2e-76
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   285   3e-76
AY294152_1(AY294152|pid:none) Mayorella sp. JJP-2003 actin mRNA,...   285   3e-76
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1;          284   6e-76
protein update 2009. 6. 4
PSORT 

 psg: 0.75  gvh: 0.34  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SLH231 is nuc
5' end seq. ID SLH231F
5' end seq. 
>SLH231F.Seq
AAAAAATGGACGGTGAAGATGTTCAAGCTTTAGTTATCGATAACGGTTCTGGTATGTGTA
AAGCCGGTTTTGCTGGTGATGATGCCCCACGTGCTGTTTTCCCATCAATTGTTGGTCGTC
CAAGACACACTGGTGTTATGGTCGGTATGGGTCAAAAGGATTCATATGTAGGTGATGAAG
CTCAATCAAAGAGAGGTATCTTAACCCTCAAATACCCAATTGAACACGGTATCGTTACCA
ACTGGGATGATATGGAAAAAATCTGGCATCATACTTTCTACAATGAACTCCGTGTTGCTC
CAGAAGAACACCCAGTTCTCTTAACCGAAGCCCCATTAAATCCAAAGGCCAACAGAGAAA
AAATGACTCAAATTATGTTTGAAACTTTCAACACCCCAGCCATGTACGTTGCCATTCAAA
CAGTCTTATCC----------
Length of 5' end seq. 431
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -