SLH229
Library SL
(Link to library)
Clone ID SLH229
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15799-1
Original site URL
Representative seq. ID SLH229Z
(Link to Original site)
Representative DNA sequence
>SLH229 (SLH229Q) /CSM/SL/SLH2-B/SLH229Q.Seq.d/
XXXXXXXXXXGAAAGGAGAAACCGAAGAAGGTGAAGAAGTCGATGAAGCCTCTAATACTA
CCACTGGACAAACTACCACCAACGCTAACCAACCAAAAAAACCAAACGACAATAATAATA
ACAACAAAGGTAAAGGTAAAAAAGGTAAAGGTAAAGGTGGAAGAAAATAAATTAATTTAG
TCTTTTTTTTCCAAGTCTTTCCAAAAAAAAAAAAAAAAAAAAATATCCAAAAAATATCCG
AAAAAAAAAAAAAATCCATATCTCACTTACAAAAAAATG
sequence update 1998. 7. 2
Translated Amino Acid sequence
---KEKPKKVKKSMKPLILPLDKLPPTLTNQKNQTTIIITTKVKVKKVKVKVEENKLI*s
ffsksfqkkkkkkiskkypkkkknpyltykkm


Translated Amino Acid sequence (All Frames)
Frame A:
---kgeteegeevdeasntttgqtttnanqpkkpndnnnnnkgkgkkgkgkggrk*inlv
fffqvfpkkkkkkniqkisekkkksishlqkn


Frame B:
---KEKPKKVKKSMKPLILPLDKLPPTLTNQKNQTTIIITTKVKVKKVKVKVEENKLI*s
ffsksfqkkkkkkiskkypkkkknpyltykkm


Frame C:
---rrnrrr*rsr*sl*yyhwtnyhqr*ptkktkrq***qqr*r*kr*r*rwkkin*fsl
ffpslskkkkkkkypknirkkkkihisltkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLH229 (SLH229Q) /CSM/SL/SLH2-B/SLH229Q.Seq.d/ 167 1e-40
VHQ427 (VHQ427Q) /CSM/VH/VHQ4-B/VHQ427Q.Seq.d/ 149 3e-35
FCL-AB16 (FCL-AB16Q) /CSM/FCL/FCL-AB/FCL-AB16Q.Seq.d/ 149 3e-35
FC-AY12 (FC-AY12Q) /CSM/FC/FC-AY/FC-AY12Q.Seq.d/ 149 3e-35
FC-AV06 (FC-AV06Q) /CSM/FC/FC-AV/FC-AV06Q.Seq.d/ 149 3e-35
FC-AJ02 (FC-AJ02Q) /CSM/FC/FC-AJ/FC-AJ02Q.Seq.d/ 149 3e-35
FC-172 (FC-172Q) /CSM/CG/CG-FC/FC-172Q.Seq.d/ 149 3e-35
SLG160 (SLG160Q) /CSM/SL/SLG1-C/SLG160Q.Seq.d/ 143 2e-33
AHR183 (AHR183Q) /CSM/AH/AHR1-D/AHR183Q.Seq.d/ 143 2e-33
CHQ241 (CHQ241Q) /CSM/CH/CHQ2-B/CHQ241Q.Seq.d/ 38 0.067

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU039237) Dictyostelium discoideum slug cDNA, clone SLH229. 147 9e-47 3
(AU285040) Dictyostelium discoideum gamete cDNA clone:FCL-AB... 131 2e-41 3
(AU039674) Dictyostelium discoideum slug cDNA, clone SLG160. 131 2e-41 3
(AU284474) Dictyostelium discoideum gamete cDNA clone:FC-AY1... 131 5e-38 2
(AU284296) Dictyostelium discoideum gamete cDNA clone:FC-AJ0... 131 5e-38 2
(AU284434) Dictyostelium discoideum gamete cDNA clone:FC-AV0... 131 5e-38 2
(AU061806) Dictyostelium discoideum slug cDNA, clone SLG160. 123 2e-27 2
(BJ446622) Dictyostelium discoideum cDNA clone:ddv63f08, 3' ... 131 1e-26 1
(BJ358114) Dictyostelium discoideum cDNA clone:dda65e21, 3' ... 125 9e-25 1
(DR170000) 22_H24:A Triphysaria versicolor root-tip, early D... 46 0.68 1
dna update 2009. 6. 1
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 117,195,334
protein update 2009. 6. 4
PSORT

psg: 0.79 gvh: 0.56 alm: 0.52 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.21 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: nuclear
24.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for SLH229 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLH229Z
3' end seq.
>SLH229Z.Seq
----------GAAAGGAGAAACCGAAGAAGGTGAAGAAGTCGATGAAGCCTCTAATACTA
CCACTGGACAAACTACCACCAACGCTAACCAACCAAAAAAACCAAACGACAATAATAATA
ACAACAAAGGTAAAGGTAAAAAAGGTAAAGGTAAAGGTGGAAGAAAATAAATTAATTTAG
TCTTTTTTTTCCAAGTCTTTCCAAAAAAAAAAAAAAAAAAAAATATCCAAAAAATATCCG
AAAAAAAAAAAAAATCCATATCTCACTTACAAAAAAATG
Length of 3' end seq. 269
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -