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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH226
Library SL
(Link to library)
Clone ID SLH226
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16444-1
Original site URL
Representative seq. ID SLH226Z
(Link to Original site)
Representative DNA sequence 
>SLH226 (SLH226Q) /CSM/SL/SLH2-B/SLH226Q.Seq.d/
XXXXXXXXXXTAGAAAGAGTCAAATTCAAGAATACGTAGATTTCTACAATGGTGCTGGTG
TTCAACATATCGCCTTAAAGACTGATAACATCATTGATGCTATCTCAAAATTAAGATCTC
GTGGTGTCTCTTTCCTCACTGTTCCAAAAACATACTATACATCACTCAGAGAGAAATTAC
AACACTCTTCATTAGAAATTAAAGAAGATTTGGACACTTTAGAGAAATTACACATTTTAA
TCGATTATGATGACAAAGGTTATCTTTTACAAATCTTTACAAATAATGTTGAAGATAAAC
CAACTGTTTTCTTTGAAATTATCCAAAGAAACAACCATGATGGTTTCGGTGCTGGTAACT
TTAAATCCCTCTTTGAAGCAATCGAAAGACAACAAGAAACTCGTGGAAACTTATAGGTGT
GTCTCAATTACAAATGTTCTTTATTATTAACTAAATAACATTACAATATATCAAAATAAA
TAATAAATAAATACTCTATTTAAAAAGTAATTTTTTAATAGTAAAC
sequence update 1998. 7. 2
Translated Amino Acid sequence 
---RKSQIQEYVDFYNGAGVQHIALKTDNIIDAISKLRSRGVSFLTVPKTYYTSLREKLQ
HSSLEIKEDLDTLEKLHILIDYDDKGYLLQIFTNNVEDKPTVFFEIIQRNNHDGFGAGNF
KSLFEAIERQQETRGNL*vclnykcsllltk*hynisk*iinkysi*kvif***
Translated Amino Acid sequence (All Frames) 
Frame A:
---RKSQIQEYVDFYNGAGVQHIALKTDNIIDAISKLRSRGVSFLTVPKTYYTSLREKLQ
HSSLEIKEDLDTLEKLHILIDYDDKGYLLQIFTNNVEDKPTVFFEIIQRNNHDGFGAGNF
KSLFEAIERQQETRGNL*vclnykcsllltk*hynisk*iinkysi*kvif***


Frame B:
---ervkfknt*istmvlvfnisp*rlitslmlsqn*dlvvslsslfqkhtihhsernyn
tlh*klkkiwtl*rnytf*simmtkvifykslqimlkinqlfslklskettmmvsvlvtl
npslkqskdnkklvetyrcvsitnvlyy*lnnitiyqnk**intlfkk*ffnsk


Frame C:
---kesnsrirrflqwcwcstyrlkd**hh*cylkikiswclfphcsknilyitqreitt
lfirn*rrfghfreithfnrl**qrlsftnlyk*c*r*tncfl*nypkkqp*wfrcw*l*
ipl*snrkttrnswkligvsqlqmffiin*itlqyikinnk*ilylksnflivn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ394 (VSJ394Q) /CSM/VS/VSJ3-D/VSJ394Q.Seq.d/                        870   0.0
VSH226 (VSH226Q) /CSM/VS/VSH2-B/VSH226Q.Seq.d/                        870   0.0
VSF755 (VSF755Q) /CSM/VS/VSF7-C/VSF755Q.Seq.d/                        870   0.0
VSE214 (VSE214Q) /CSM/VS/VSE2-A/VSE214Q.Seq.d/                        870   0.0
VSD101 (VSD101Q) /CSM/VS/VSD1-A/VSD101Q.Seq.d/                        870   0.0
VSB809 (VSB809Q) /CSM/VS/VSB8-A/VSB809Q.Seq.d/                        870   0.0
VHK157 (VHK157Q) /CSM/VH/VHK1-C/VHK157Q.Seq.d/                        870   0.0
VFO548 (VFO548Q) /CSM/VF/VFO5-B/VFO548Q.Seq.d/                        870   0.0
VFN489 (VFN489Q) /CSM/VF/VFN4-D/VFN489Q.Seq.d/                        870   0.0
VFN484 (VFN484Q) /CSM/VF/VFN4-D/VFN484Q.Seq.d/                        870   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...   852   0.0    1
(AU269851) Dictyostelium discoideum vegetative cDNA clone:VS...   852   0.0    1
(AU267100) Dictyostelium discoideum vegetative cDNA clone:VS...   852   0.0    1
(AU265736) Dictyostelium discoideum vegetative cDNA clone:VS...   852   0.0    1
(AU263467) Dictyostelium discoideum vegetative cDNA clone:VS...   852   0.0    1
(AU262948) Dictyostelium discoideum vegetative cDNA clone:VS...   852   0.0    1
(AU262259) Dictyostelium discoideum vegetative cDNA clone:VS...   852   0.0    1
(AU052990) Dictyostelium discoideum slug cDNA, clone SLF461.      852   0.0    1
(AU040001) Dictyostelium discoideum slug cDNA, clone SLH413.      852   0.0    1
(AU039725) Dictyostelium discoideum slug cDNA, clone SLG270.      852   0.0    1
dna update 2009. 6. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q76NV5) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   269   3e-71
AM114773_1(AM114773|pid:none) Platynereis dumerilii partial mRNA...   201   1e-50
BC046075_1(BC046075|pid:none) Danio rerio zgc:56326, mRNA (cDNA ...   191   7e-48
(O42764) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   191   7e-48
(Q6TGZ5) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   191   7e-48
S32821(S32821;S35890;S35889)4-hydroxyphenylpyruvate dioxygenase ...   190   2e-47
(Q02110) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   190   2e-47
AE014296_3563(AE014296|pid:none) Drosophila melanogaster chromos...   189   3e-47
(P32754) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   188   6e-47
BC077167_1(BC077167|pid:none) Danio rerio 4-hydroxyphenylpyruvat...   188   8e-47
protein update 2009. 6. 4
PSORT 

 psg: 0.81  gvh: 0.29  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SLH226 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLH226Z
3' end seq. 
>SLH226Z.Seq
----------TAGAAAGAGTCAAATTCAAGAATACGTAGATTTCTACAATGGTGCTGGTG
TTCAACATATCGCCTTAAAGACTGATAACATCATTGATGCTATCTCAAAATTAAGATCTC
GTGGTGTCTCTTTCCTCACTGTTCCAAAAACATACTATACATCACTCAGAGAGAAATTAC
AACACTCTTCATTAGAAATTAAAGAAGATTTGGACACTTTAGAGAAATTACACATTTTAA
TCGATTATGATGACAAAGGTTATCTTTTACAAATCTTTACAAATAATGTTGAAGATAAAC
CAACTGTTTTCTTTGAAATTATCCAAAGAAACAACCATGATGGTTTCGGTGCTGGTAACT
TTAAATCCCTCTTTGAAGCAATCGAAAGACAACAAGAAACTCGTGGAAACTTATAGGTGT
GTCTCAATTACAAATGTTCTTTATTATTAACTAAATAACATTACAATATATCAAAATAAA
TAATAAATAAATACTCTATTTAAAAAGTAATTTTTTAATAGTAAAC
Length of 3' end seq. 516
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -