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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH222
Library SL
(Link to library)
Clone ID SLH222
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16475-1
Original site URL
Representative seq. ID SLH222Z
(Link to Original site)
Representative DNA sequence 
>SLH222 (SLH222Q) /CSM/SL/SLH2-A/SLH222Q.Seq.d/
XXXXXXXXXXCGATAGAAGATGTGCTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTG
TAAACAATACTGCTATCGGTAAAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAA
AACCATTTGTTTGTCAAAAAGCTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTG
TAGTTGGTGCTGTTGTTTTAGGTGCTGCTATATTTGCGGGTAAGAAAGGTTATGATGCTT
GGAAAACAAGTCAAGGAAATGTTATGGCAGCTTCACAAGCTAATCCATTATATACTCAAT
CAAGTAATGGAGGTGAAAATCCACTCTATAACTCACCAACATAAATCCAAAAACCTAATT
TATAAAATCATGTATTGTTTTAATTTTAATTTTTTTCCAGTCTTATTTTCATAAAAATGC
GCCTCAAATATATAATGTACAAA
sequence update 1998. 7. 2
Translated Amino Acid sequence 
---DRRCAPDNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPFVCQKAALVSTAVIASVVV
VGAVVLGAAIFAGKKGYDAWKTSQGNVMAASQANPLYTQSSNGGENPLYNSPT*iqkpnl
*nhvlf*f*ffsslifikmrlkyimyk
Translated Amino Acid sequence (All Frames) 
Frame A:
---DRRCAPDNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPFVCQKAALVSTAVIASVVV
VGAVVLGAAIFAGKKGYDAWKTSQGNVMAASQANPLYTQSSNGGENPLYNSPT*iqkpnl
*nhvlf*f*ffsslifikmrlkyimyk


Frame B:
---iedvlliivnvkkvsv*tillsvkmmenvflkimiqnhlfvkkll*fqllllqvll*
lvllf*vllylrvrkvmmlgkqvkemlwqlhklihyilnqvmevkihsithqhksknliy
kimycfnfnffpvlfs*kcasni*ct


Frame C:
---*kmcs****msrrclckqycyr*k*wkmyf*rl*skticlskscfsfnccyckcccs
wcccfrccyicg*erl*clenksrkcygsfts*siiysik*wr*kstl*ltninpkt*fi
kscivliliffqsyfhknapqiynvq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG856 (SSG856Q) /CSM/SS/SSG8-C/SSG856Q.Seq.d/                        728   0.0
SSG816 (SSG816Q) /CSM/SS/SSG8-A/SSG816Q.Seq.d/                        728   0.0
SLI603 (SLI603Q) /CSM/SL/SLI6-A/SLI603Q.Seq.d/                        728   0.0
SLI537 (SLI537Q) /CSM/SL/SLI5-B/SLI537Q.Seq.d/                        728   0.0
SLH222 (SLH222Q) /CSM/SL/SLH2-A/SLH222Q.Seq.d/                        728   0.0
SLG730 (SLG730Q) /CSM/SL/SLG7-B/SLG730Q.Seq.d/                        728   0.0
SLF208 (SLF208Q) /CSM/SL/SLF2-A/SLF208Q.Seq.d/                        728   0.0
SLE383 (SLE383Q) /CSM/SL/SLE3-D/SLE383Q.Seq.d/                        728   0.0
SLE246 (SLE246Q) /CSM/SL/SLE2-B/SLE246Q.Seq.d/                        728   0.0
SLD406 (SLD406Q) /CSM/SL/SLD4-A/SLD406Q.Seq.d/                        728   0.0
own update 2001. 8.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C89992) Dictyostelium discoideum slug cDNA, clone SSG816.        728   0.0    2
(AU034728) Dictyostelium discoideum slug cDNA, clone SLE246.      728   0.0    2
(AU033790) Dictyostelium discoideum slug cDNA, clone SLB442.      728   0.0    2
(AU052850) Dictyostelium discoideum slug cDNA, clone SLF208.      728   0.0    2
(AU034204) Dictyostelium discoideum slug cDNA, clone SLC255.      728   0.0    2
(AU034947) Dictyostelium discoideum slug cDNA, clone SLE383.      728   0.0    2
(C89795) Dictyostelium discoideum slug cDNA, clone SSG856.        728   0.0    2
(BJ395964) Dictyostelium discoideum cDNA clone:dds40h20, 5' ...   728   0.0    2
(AU034044) Dictyostelium discoideum slug cDNA, clone SLB845.      728   0.0    2
(AU039234) Dictyostelium discoideum slug cDNA, clone SLH222.      728   0.0    2
dna update 2009. 6. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                175   5e-43
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...    94   1e-18
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...    88   1e-16
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...    85   7e-16
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                 84   1e-15
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 80   3e-14
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 68   8e-11
EF494740_11(EF494740|pid:none) Blastocystis sp. NandII mitochond...    32   5.1
(Q54JA3) RecName: Full=Integrin beta-like protein E; Flags: Prec...    32   6.7
protein update 2009. 1.24
PSORT 

 psg: 0.68  gvh: 0.52  alm: 0.16  top: 0.73  tms: 0.07  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  8.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum
	  4.0 %: Golgi
	  4.0 %: peroxisomal

>> prediction for SLH222 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLH222Z
3' end seq. 
>SLH222Z.Seq
----------CGATAGAAGATGTGCTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTG
TAAACAATACTGCTATCGGTAAAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAA
AACCATTTGTTTGTCAAAAAGCTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTG
TAGTTGGTGCTGTTGTTTTAGGTGCTGCTATATTTGCGGGTAAGAAAGGTTATGATGCTT
GGAAAACAAGTCAAGGAAATGTTATGGCAGCTTCACAAGCTAATCCATTATATACTCAAT
CAAGTAATGGAGGTGAAAATCCACTCTATAACTCACCAACATAAATCCAAAAACCTAATT
TATAAAATCATGTATTGTTTTAATTTTAATTTTTTTCCAGTCTTATTTTCATAAAAATGC
GCCTCAAATATATAATGTACAAA
Length of 3' end seq. 433
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -