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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLH220
Library SL
(Link to library)
Clone ID SLH220
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15409-1
Original site URL
Representative seq. ID SLH220F
(Link to Original site)
Representative DNA sequence 
>SLH220 (SLH220Q) /CSM/SL/SLH2-A/SLH220Q.Seq.d/
GAAGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGAT
GAAGATGAAGATGAAGATGAAGATGAAGAATATGAAGATGAAGATGAAGATGAAGATATT
ATTGGAGATGACGCTGAGGTTGAAAAAGAAAACAAGAATGGATTTTCTCATTTAGAATCA
CTACAAATTACACCAATACCTCACGACAAAGATGAAGAACAACCAGAAAAACCTCAACAA
CAAGAGATACATCAACAACCAGAGAAACCTCAACAACCAGAGAAACCACAAGAACTACAA
TCAACTGAAACACCAGGACAAGAAGTATCAGTTGATTATAAAATCCTTTATGACAGAAAA
GCTTTCAAAGAATTTTTATACGGTGGATTCGAAAAATTCACTGAAGATTTGAAACTGCAA
ATCCTTGATGCCGGTATCAATTGTTTTTCAGTTTTATTAAATTTAAAGAGTGAAGACTGG
TCAAAGTTTTCATTCTTACAATTACCAAAGXXXXXXXXXX
sequence update 1999. 2. 9
Translated Amino Acid sequence 
EDEDEDEDEDEDEDEDEDEDEDEDEDEDEEYEDEDEDEDIIGDDAEVEKENKNGFSHLES
LQITPIPHDKDEEQPEKPQQQEIHQQPEKPQQPEKPQELQSTETPGQEVSVDYKILYDRK
AFKEFLYGGFEKFTEDLKLQILDAGINCFSVLLNLKSEDWSKFSFLQLP---
Translated Amino Acid sequence (All Frames) 
Frame A:
EDEDEDEDEDEDEDEDEDEDEDEDEDEDEEYEDEDEDEDIIGDDAEVEKENKNGFSHLES
LQITPIPHDKDEEQPEKPQQQEIHQQPEKPQQPEKPQELQSTETPGQEVSVDYKILYDRK
AFKEFLYGGFEKFTEDLKLQILDAGINCFSVLLNLKSEDWSKFSFLQLP---


Frame B:
kmkmkmkmkmkmkmkmkmkmkmkmkmkmknmkmkmkmkillemtlrlkkktrmdfli*nh
yklhqylttkmknnqknlnnkryinnqrnlnnqrnhknynqlkhqdkkyqliiksfmtek
lsknfytvdsknslki*nckslmpvsivfqfy*i*rvktgqsfhsynyq---


Frame C:
r*r*r*r*r*r*r*r*r*r*r*r*r*r*ri*r*r*r*ryywr*r*g*krkqewifsfrit
tnytntsrqr*rttrktsttrdtsttretsttrettrttin*ntrtrsis*l*npl*qks
fqrifirwirkih*rfetanp*cryqlffsfikfke*rlvkvfiltitk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH220 (SLH220Q) /CSM/SL/SLH2-A/SLH220Q.Seq.d/                        781   0.0
CFC762 (CFC762Q) /CSM/CF/CFC7-C/CFC762Q.Seq.d/                        541   e-153
VSC489 (VSC489Q) /CSM/VS/VSC4-D/VSC489Q.Seq.d/                        145   8e-34
VHO702 (VHO702Q) /CSM/VH/VHO7-A/VHO702Q.Seq.d/                         40   0.033
VHM446 (VHM446Q) /CSM/VH/VHM4-B/VHM446Q.Seq.d/                         40   0.033
VHB508 (VHB508Q) /CSM/VH/VHB5-A/VHB508Q.Seq.d/                         40   0.033
SSF178 (SSF178Q) /CSM/SS/SSF1-D/SSF178Q.Seq.d/                         40   0.033
SHL870 (SHL870Q) /CSM/SH/SHL8-C/SHL870Q.Seq.d/                         40   0.033
SHI121 (SHI121Q) /CSM/SH/SHI1-A/SHI121Q.Seq.d/                         40   0.033
SHE188 (SHE188Q) /CSM/SH/SHE1-D/SHE188Q.Seq.d/                         40   0.033
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU062016) Dictyostelium discoideum slug cDNA, clone SLH220.      424   e-165  2
(BJ374132) Dictyostelium discoideum cDNA clone:ddc6l15, 3' e...   424   e-114  1
(AU262599) Dictyostelium discoideum vegetative cDNA clone:VS...   143   8e-30  1
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    68   5e-20  2
(AC126710) Rattus norvegicus clone CH230-5P5, *** SEQUENCING...    50   0.085  1
(GH385279) G897P517FJ15.T0 C. immitis RS, 120HR Spherul_NORM...    50   0.085  1
(GH373307) G896P547FK15.T0 C. immitis RS, 72HR Spherule_NORM...    50   0.085  1
(AC210385) Populus trichocarpa clone POP037-E20, complete se...    44   0.24   2
(AF340153) Dictyostelium discoideum calcium-dependent cell a...    48   0.33   1
(AC104077) Homo sapiens BAC clone RP11-413P19 from 4, comple...    48   0.33   1
dna update 2009. 5.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ233674_1(DQ233674|pid:none) Lactobacillus reuteri conserved in...    33   5.5
protein update 2009. 1.24
PSORT 

 psg: 0.75  gvh: -0.08  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.10  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for SLH220 is nuc
5' end seq. ID SLH220F
5' end seq. 
>SLH220F.Seq
GAAGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGAT
GAAGATGAAGATGAAGATGAAGATGAAGAATATGAAGATGAAGATGAAGATGAAGATATT
ATTGGAGATGACGCTGAGGTTGAAAAAGAAAACAAGAATGGATTTTCTCATTTAGAATCA
CTACAAATTACACCAATACCTCACGACAAAGATGAAGAACAACCAGAAAAACCTCAACAA
CAAGAGATACATCAACAACCAGAGAAACCTCAACAACCAGAGAAACCACAAGAACTACAA
TCAACTGAAACACCAGGACAAGAAGTATCAGTTGATTATAAAATCCTTTATGACAGAAAA
GCTTTCAAAGAATTTTTATACGGTGGATTCGAAAAATTCACTGAAGATTTGAAACTGCAA
ATCCTTGATGCCGGTATCAATTGTTTTTCAGTTTTATTAAATTTAAAGAGTGAAGACTGG
TCAAAGTTTTCATTCTTACAATTACCAAAG----------
Length of 5' end seq. 510
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -