SLH218
Library SL
(Link to library)
Clone ID SLH218
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16325-1
Original site URL
Representative seq. ID SLH218F
(Link to Original site)
Representative DNA sequence
>SLH218 (SLH218Q) /CSM/SL/SLH2-A/SLH218Q.Seq.d/
CCATGGTTGTCGTCCAGATAGTTGCGCTAGAGGTGAGAAATGTATCTGTGTACGTGGTAA
GATCTATTGTATTCCAAAGACCACCTGTGATCAAGTACGTTGTCCAAGAAAACACCATTG
TGAATGCAATAGAAAAGGTCAAGTTTTCTGTGTTCCAGATTGTCCAAAATTAACTTGTAA
ACAAGTTGGTTGCCCAGAAAACCATGAATGCGTTTCAAGACGTGGTGAACTCCATTGTGT
ATACGTTAGACCACCAACAGGTAGATGGGGTGATGATCTCTCAGATTTAGGTTACAATCA
AGCAAGTGTTGAAGCTGCAATTGATGCTTATGAAGCCCAAAGGGGTCAAAGACCACATAA
TAATATTCCATCAAACAATTTACATCAAGAAAACAATGATAATTTGGGTGATGGTTTTTX
XXXXXXXXX
sequence update 1999. 2. 9
Translated Amino Acid sequence
HGCRPDSCARGEKCICVRGKIYCIPKTTCDQVRCPRKHHCECNRKGQVFCVPDCPKLTCK
QVGCPENHECVSRRGELHCVYVRPPTGRWGDDLSDLGYNQASVEAAIDAYEAQRGQRPHN
NIPSNNLHQENNDNLGDGF---


Translated Amino Acid sequence (All Frames)
Frame A:
pwlssr*lr*r*emylctw*dllyskdhl*sstlskktpl*mq*krssflcsrlskinl*
tswlprkp*mrfktw*tplcir*ttnr*mg**slrfrlqsskc*scn*cl*spkgsktt*
*ysikqftsrkq**fg*wf---


Frame B:
HGCRPDSCARGEKCICVRGKIYCIPKTTCDQVRCPRKHHCECNRKGQVFCVPDCPKLTCK
QVGCPENHECVSRRGELHCVYVRPPTGRWGDDLSDLGYNQASVEAAIDAYEAQRGQRPHN
NIPSNNLHQENNDNLGDGF---


Frame C:
mvvvqivalevrnvsvyvvrsivfqrppvikyvvqentivnaiekvkfsvfqivqn*lvn
klvaqktmnafqdvvnsivytldhqqvdgvmisqi*vtikqvlklqlmlmkpkgvkdhii
ifhqtiyikktmiiwvmv---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLI883 (SLI883Q) /CSM/SL/SLI8-D/SLI883Q.Seq.d/ 831 0.0
SLI370 (SLI370Q) /CSM/SL/SLI3-C/SLI370Q.Seq.d/ 831 0.0
SLI170 (SLI170Q) /CSM/SL/SLI1-C/SLI170Q.Seq.d/ 831 0.0
SLH218 (SLH218Q) /CSM/SL/SLH2-A/SLH218Q.Seq.d/ 831 0.0
SLG187 (SLG187Q) /CSM/SL/SLG1-D/SLG187Q.Seq.d/ 831 0.0
SLE234 (SLE234Q) /CSM/SL/SLE2-B/SLE234Q.Seq.d/ 831 0.0
SLE215 (SLE215Q) /CSM/SL/SLE2-A/SLE215Q.Seq.d/ 831 0.0
SLC695 (SLC695Q) /CSM/SL/SLC6-D/SLC695Q.Seq.d/ 831 0.0
SLC649 (SLC649Q) /CSM/SL/SLC6-C/SLC649Q.Seq.d/ 831 0.0
SLC537 (SLC537Q) /CSM/SL/SLC5-B/SLC537Q.Seq.d/ 831 0.0

own update 2004. 7.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AF066071) Dictyostelium discoideum SP85 (pspB) gene, comple... 831 0.0 1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 831 0.0 1
(AU062015) Dictyostelium discoideum slug cDNA, clone SLH218. 831 0.0 1
(AU053547) Dictyostelium discoideum slug cDNA, clone SLI883. 831 0.0 1
(AU053311) Dictyostelium discoideum slug cDNA, clone SLI370. 831 0.0 1
(AU053222) Dictyostelium discoideum slug cDNA, clone SLI170. 831 0.0 1
(AU052289) Dictyostelium discoideum slug cDNA, clone SLA746. 831 0.0 1
(AU039689) Dictyostelium discoideum slug cDNA, clone SLG187. 831 0.0 1
(AU039504) Dictyostelium discoideum slug cDNA, clone SLA756. 831 0.0 1
(AU034719) Dictyostelium discoideum slug cDNA, clone SLE234. 831 0.0 1
dna update 2009. 5.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce... 317 8e-86
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region... 230 1e-59
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor... 93 3e-18
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 55 1e-06
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 54 2e-06
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 49 4e-05
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa... 47 2e-04
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for... 46 4e-04
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 45 6e-04
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 43 0.004
protein update 2009. 6. 4
PSORT

psg: 0.56 gvh: 0.39 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
28.0 %: nuclear
24.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for SLH218 is cyt

5' end seq. ID SLH218F
5' end seq.
>SLH218F.Seq
CCATGGTTGTCGTCCAGATAGTTGCGCTAGAGGTGAGAAATGTATCTGTGTACGTGGTAA
GATCTATTGTATTCCAAAGACCACCTGTGATCAAGTACGTTGTCCAAGAAAACACCATTG
TGAATGCAATAGAAAAGGTCAAGTTTTCTGTGTTCCAGATTGTCCAAAATTAACTTGTAA
ACAAGTTGGTTGCCCAGAAAACCATGAATGCGTTTCAAGACGTGGTGAACTCCATTGTGT
ATACGTTAGACCACCAACAGGTAGATGGGGTGATGATCTCTCAGATTTAGGTTACAATCA
AGCAAGTGTTGAAGCTGCAATTGATGCTTATGAAGCCCAAAGGGGTCAAAGACCACATAA
TAATATTCCATCAAACAATTTACATCAAGAAAACAATGATAATTTGGGTGATGGTTTTT-
---------
Length of 5' end seq. 419
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -