SLH211
Library SL
(Link to library)
Clone ID SLH211
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16162-1
Original site URL
Representative seq. ID SLH211Z
(Link to Original site)
Representative DNA sequence
>SLH211 (SLH211Q) /CSM/SL/SLH2-A/SLH211Q.Seq.d/
XXXXXXXXXXTTGAAAAGAAGAAACCAACTTCATCAGTTGTCACATTACCAAGTGGTTTA
CAATATGAAGATTTAGTCGTTGGTTCTGGTCCATCACCAAAGAGCGGTAAAAAGGTTGGT
GTCAAATACATTGGTAAACTTACTAATGGTAAAACTTTTGATTCCTCCCTTCGTACTCCA
TTCACTTTCCGTATTGGTATCAGAGAAGTCATCAGGGGTTGGGATATCGGTGTTGCCTCA
ATGAAAGTTGGTGGAAAGAGAAGATTAACAATTCCAGCTGATTTAGCCTATGGTAGATCT
GGTGCCCCACCATCAATTCCACCAAATGCTACTTTAATCTTTGATGTCGAATTAGTATCA
TGTGCTCAATAAATTAATTAATAACAAAATTAAAATTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
sequence update 1998. 7. 2
Translated Amino Acid sequence
---EKKKPTSSVVTLPSGLQYEDLVVGSGPSPKSGKKVGVKYIGKLTNGKTFDSSLRTPF
TFRIGIREVIRGWDIGVASMKVGGKRRLTIPADLAYGRSGAPPSIPPNATLIFDVELVSC
AQ*in**qn*n*kkkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---*keetnfischitkwfti*rfsrwfwsitker*kgwcqihw*ty*w*nf*flpsysi
hfpywyqrshqglgyrcclneswwkekinnss*fslw*iwcptinstkcyfnl*crisim
csin*litklklkkkkkkkkkkkkk


Frame B:
---EKKKPTSSVVTLPSGLQYEDLVVGSGPSPKSGKKVGVKYIGKLTNGKTFDSSLRTPF
TFRIGIREVIRGWDIGVASMKVGGKRRLTIPADLAYGRSGAPPSIPPNATLIFDVELVSC
AQ*in**qn*n*kkkkkkkkkkkk


Frame C:
---krrnqlhqlshyqvvynmki*slvlvhhqravkrlvsntlvnllmvkllippfvlhs
lsvlvsekssgvgisvlpq*klvered*qfqli*pmvdlvphhqfhqmll*slmsn*yhv
lnklinnkikikkkkkkkkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLI277 (SLI277Q) /CSM/SL/SLI2-D/SLI277Q.Seq.d/ 767 0.0
SLH211 (SLH211Q) /CSM/SL/SLH2-A/SLH211Q.Seq.d/ 767 0.0
SLB410 (SLB410Q) /CSM/SL/SLB4-A/SLB410Q.Seq.d/ 767 0.0
SFJ632 (SFJ632Q) /CSM/SF/SFJ6-B/SFJ632Q.Seq.d/ 767 0.0
SFF885 (SFF885Q) /CSM/SF/SFF8-D/SFF885Q.Seq.d/ 767 0.0
SFD696 (SFD696Q) /CSM/SF/SFD6-D/SFD696Q.Seq.d/ 767 0.0
CFJ873 (CFJ873Q) /CSM/CF/CFJ8-D/CFJ873Q.Seq.d/ 767 0.0
AFB487 (AFB487Q) /CSM/AF/AFB4-D/AFB487Q.Seq.d/ 767 0.0
SFE395 (SFE395Q) /CSM/SF/SFE3-D/SFE395Q.Seq.d/ 759 0.0
SFJ532 (SFJ532Q) /CSM/SF/SFJ5-B/SFJ532Q.Seq.d/ 751 0.0

own update 2001.11.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU053266) Dictyostelium discoideum slug cDNA, clone SLI277. 767 0.0 1
(AU039230) Dictyostelium discoideum slug cDNA, clone SLH211. 767 0.0 1
(AU033763) Dictyostelium discoideum slug cDNA, clone SLB410. 767 0.0 1
(BJ402086) Dictyostelium discoideum cDNA clone:dds20o08, 3' ... 767 0.0 1
(BJ400145) Dictyostelium discoideum cDNA clone:dds8o24, 3' e... 767 0.0 1
(BJ398547) Dictyostelium discoideum cDNA clone:dds12j22, 3' ... 767 0.0 1
(BJ375987) Dictyostelium discoideum cDNA clone:ddc20b20, 3' ... 767 0.0 1
(BJ340805) Dictyostelium discoideum cDNA clone:dda3n22, 3' e... 767 0.0 1
(BJ400369) Dictyostelium discoideum cDNA clone:dds9n23, 3' e... 759 0.0 1
(BJ402085) Dictyostelium discoideum cDNA clone:dds20o07, 3' ... 722 0.0 2
dna update 2009. 5.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P0C1J6) RecName: Full=FK506-binding protein 4; EC=5.2.... 145 5e-34
CP000148_2337(CP000148|pid:none) Geobacter metallireducens GS-15... 134 7e-31
(Q7SCN0) RecName: Full=FK506-binding protein 4; EC=5.2.... 133 2e-30
CP000908_4585(CP000908|pid:none) Methylobacterium extorquens PA1... 129 4e-29
CP000698_1762(CP000698|pid:none) Geobacter uraniireducens Rf4, c... 128 5e-29
CP001089_2339(CP001089|pid:none) Geobacter lovleyi SZ, complete ... 128 5e-29
CP001029_5085(CP001029|pid:none) Methylobacterium populi BJ001, ... 127 9e-29
CP000239_1509(CP000239|pid:none) Synechococcus sp. JA-3-3Ab, com... 127 1e-28
(Q5KIJ5) RecName: Full=FK506-binding protein 4; EC=5.2.... 127 1e-28
BA000045_841(BA000045|pid:none) Gloeobacter violaceus PCC 7421 D... 127 2e-28
protein update 2009. 6. 4
PSORT

psg: 0.89 gvh: 0.39 alm: 0.43 top: 0.33 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system

>> prediction for SLH211 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLH211Z
3' end seq.
>SLH211Z.Seq
----------TTGAAAAGAAGAAACCAACTTCATCAGTTGTCACATTACCAAGTGGTTTA
CAATATGAAGATTTAGTCGTTGGTTCTGGTCCATCACCAAAGAGCGGTAAAAAGGTTGGT
GTCAAATACATTGGTAAACTTACTAATGGTAAAACTTTTGATTCCTCCCTTCGTACTCCA
TTCACTTTCCGTATTGGTATCAGAGAAGTCATCAGGGGTTGGGATATCGGTGTTGCCTCA
ATGAAAGTTGGTGGAAAGAGAAGATTAACAATTCCAGCTGATTTAGCCTATGGTAGATCT
GGTGCCCCACCATCAATTCCACCAAATGCTACTTTAATCTTTGATGTCGAATTAGTATCA
TGTGCTCAATAAATTAATTAATAACAAAATTAAAATTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
Length of 3' end seq. 427
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -